2.0.4

• Fix to include reference to correct container on quay for calculating alignment score
• Update to pathogen name mapping (again)
• MultiQC formatting changes
• Change alignment scoring to suphigh config (for now)

v2.0.3

What's Changed

• Fixmtchpatchs by @Merritt-Brian in #84

Full Changelog: v2.0.2...v2.0.3

2.0.2

• Adding throughput increase for Sourmash scaling needs
• Updated Pathogens FASTA to include herpesvirus 3
• Introduced dispersion factors for gini calculations

2.0.1

Hotfix for cpu worker definition causing cloud issues

2.0.0

Version 2 update for confidence metrics

1.7.0

• Updates to MCE configurations for version 1 of the confidence metric
• Updating weight options to adjust defaults for final TASS Score
• Allow ignore weights if DIAMOND or K2 fail or skipped in final tass score

1.6.0

• Sets Minimap2 to a default aligner for short reads
• Adds K2 to the Organism Discovery Report

1.5.0

• Additions to the pathogen annotation sheet
• Merging of redundant pathogen strains/subsp in final report
• Improvements in confidence metric reporting
• Additional Databases (default) added

1.4.1

1. Added fix for improper assembly prioritization
2. Changed de-novo assembly to Megahit
3. Properly give distribution metrics in report

1.4.0

v1.4.0

Set v1.4.0 tag release