Code for the manuscript:
"Comparison of platforms for testing antibodies to Chlamydia trachomatis antigens in the Democratic Republic of the Congo and Togo. Sci Rep 11, 7225 (2021). https://doi.org/10.1038/s41598-021-86639-8
Project structure
- clean
- input (raw spreadsheets of age, titre, and sero_pos data)
- src (script to clean the data in the input folder)
- observed
- input (files for each sheet from the clean task)
- src (script to calculate age seroprevalence)
- adjust
- input (files for each sheet from the clean task)
- output (age adjusted data)
- src (script to adjust data by age weights)
- model
- input (files for each sheet from the clean task)
- src (script to run model)
- plot
- input (cleaned and prepared files from the observed and model tasks)
- output ( all original figures generated from analysis)
- src (script to make figures)