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Update parse_taxonomy.R #51

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Update parse_taxonomy.R #51

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jthmiller
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Added 'd' to gsub regular expression to remove 'd__' that is used in some formats instead of 'k__' (such as the mitofish reference)

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Update parse_taxonomy.R
fd3234f 
Added 'd' to gsub regular expression to remove 'd__' that is used in some formats instead of 'k__' (such as the mitofish reference)
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bingli2019 commented Jan 17, 2024 •
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In some case, when using "D_\\d__" is not work. so, it if can be changed to "[Dd]__" or not.
I changed it and find ok

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bingli2019 reviewed Jan 19, 2024
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taxonomy$Taxon<-gsub("D_\\d__","", taxonomy$Taxon) should be changed to
taxonomy$Taxon<-gsub("D_|d__","", taxonomy$Taxon)

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