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v0.14.0
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^appveyor\.yml$ | ||
^.*\.Rproj$ | ||
^\.Rproj\.user$ | ||
.travis.yml | ||
README.Rmd | ||
^_pkgdown\.yml$ | ||
^docs$ | ||
^pkgdown$ | ||
^\.github$ | ||
^codecov\.yml$ | ||
^doc$ | ||
^Meta$ |
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.RData | ||
.Ruserdata | ||
inst/doc | ||
doc | ||
Meta | ||
/doc/ | ||
/Meta/ |
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Package: metabolyseR | ||
Title: Methods for Pre-Treatment, Classification, Feature Selection and Correlation Analyses of Metabolomics Data | ||
Version: 0.13.4 | ||
Title: Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data | ||
Version: 0.14.0 | ||
Authors@R: person("Jasen", "Finch", email = "[email protected]", role = c("aut", "cre")) | ||
Description: Methods for pre-treatment, classification, feature selection and correlation analyses of metabolomics data. | ||
Description: A tool kit for pre-treatment, modelling, feature selection and correlation analyses of metabolomics data. | ||
URL: https://jasenfinch.github.io/metabolyseR | ||
BugReports: https://github.com/jasenfinch/metabolyseR/issues | ||
biocViews: Metabolomics | ||
Depends: R (>= 3.4.0), | ||
parallel | ||
Depends: R (>= 3.4.0) | ||
Imports: Hmisc, | ||
dplyr, | ||
magrittr, | ||
missForest, | ||
randomForest, | ||
stringr, | ||
|
@@ -19,76 +19,72 @@ Imports: Hmisc, | |
ggthemes, | ||
ggdendro, | ||
purrr, | ||
doParallel, | ||
doFuture, | ||
e1071, | ||
MASS, | ||
forestControl, | ||
crayon, | ||
yaml, | ||
cli, | ||
lubridate, | ||
ggrepel, | ||
ROCR, | ||
patchwork, | ||
yardstick, | ||
broom, | ||
rlang, | ||
tidyselect | ||
tidyselect, | ||
magrittr, | ||
furrr, | ||
future | ||
License: GPL (>= 3) | ||
Encoding: UTF-8 | ||
LazyData: true | ||
Roxygen: list(markdown = TRUE) | ||
RoxygenNote: 7.1.1 | ||
Suggests: knitr, | ||
rmarkdown, | ||
DiagrammeR, | ||
readr, | ||
testthat, | ||
metaboData, | ||
prettydoc, | ||
covr | ||
Collate: allGenerics.R | ||
allClasses.R | ||
aggregateMethods.R | ||
covr, | ||
kableExtra | ||
Collate: allClasses.R | ||
analysis-accessors.R | ||
aggregate.R | ||
analysisData.R | ||
analysisParameters.R | ||
changeParameter.R | ||
correctionMethods.R | ||
correlations-method.R | ||
correlationResults-method.R | ||
imputeMethods.R | ||
correction.R | ||
correlations.R | ||
impute.R | ||
info.R | ||
join.R | ||
keep.R | ||
metabolyse.R | ||
metabolyseR.R | ||
nlda.R | ||
occupancyMethods.R | ||
parseParameters.R | ||
plotExplanatoryHeatmap-method.R | ||
plotFeature-method.R | ||
plotLDA-method.R | ||
plotPCA-method.R | ||
plotRSD-method.R | ||
plotSupervisedRF-method.R | ||
plotTIC-method.R | ||
plotUnsupervisedRF-method.R | ||
preTreat-method.R | ||
preTreatedData-method.R | ||
preTreatedInfo-method.R | ||
preTreatMethods.R | ||
QCMethods.R | ||
rawData-method.R | ||
rawInfo-method.R | ||
reAnalyse.R | ||
reexports.R | ||
removeMethods.R | ||
show-method.R | ||
transformMethods.R | ||
univariateMethods.R | ||
modelling.R | ||
randomForest.R | ||
modellingPlots.R | ||
keepMethods.R | ||
info.R | ||
nlda.R | ||
occupancy.R | ||
parameters.R | ||
plotExplanatoryHeatmap.R | ||
plotFeature.R | ||
plotLDA.R | ||
plotOccupancy.R | ||
join.R | ||
plotPCA.R | ||
plotRSD.R | ||
plotSupervisedRF.R | ||
plotTIC.R | ||
plotting.R | ||
plotUnsupervisedRF.R | ||
pre-treatment.R | ||
QC.R | ||
reexports.R | ||
remove.R | ||
randomForest.R | ||
rsd.R | ||
show-method.R | ||
split.R | ||
transform.R | ||
univariate.R | ||
modelling-accessors.R | ||
VignetteBuilder: knitr | ||
Remotes: aberHRML/metaboData |
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