Resources

This page is filled with a nice aggregation of links from the web that enhance my comprehension and support my open-source software development. I plan to also get some old fashion paper books this summer.

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Google Summer of Code

• Google Melange 2015 Program Page

• Summary of my GEO-AWS Proposal

• Full GEO-AWS Proposal

• R project for statistical computing - GSoC wiki

GEO & GEO2R

• GEO FAQs

• GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor

• GEO2R

• My favorite data-set to work with is GSE13507, and here is the supporting research article: Predictive value of progression-related gene classifier in primary non-muscle invasive bladder cancer.. This data set is messy but I've memorized the number!

Gene Expression

• Gene Expression from Nature.com

• DNA Microarray

• DNA Microarray via Wikipedia

Bioinformatics

• My Mentor's Lab page: Bioinformatics @ ECSU

• Bioinformatics Journal

• Biostars: Stackoverflow for Bioinformatics

R Programming

• Advanced R by Hadley Wickham

• R & Bioconductor Manual

R Package Development

• Bioconductor Submission Guidelines

• Writing an R package from scratch by Hilary Parker

• The companion site for R packages by Hadley Wickham

• Creating R Packages: A Tutorial by Friedrich Leisch

Shiny

• An awesome slide deck by Joe Cheng from RStudio about Shiny in Bioinformatics

• Shiny Articles

• A Gallery of Shiny apps made with a shiny app

• Shiny-based packages on Bioconductor: shinyMethyl, shinyTANDEM, shiny-phyloseq

• DT package

• Shiny Themes

• shinyBS: Twitter Bootstrap Compnents for Shiny