GitHub - jamesjcai/stGEAToolbox: Spatial Transcriptomics Gene Expression Analysis Toolbox

stGEAToolbox - Spatial Transcriptomics Gene Expression Analysis Toolbox

Run the following code in MATLAB:

unzip('https://github.com/jamesjcai/stGEAToolbox/archive/main.zip');
addpath('./stGEAToolbox-main');

Run the following code in MATLAB to start:

stgeatool

If you have any questions or require assistance using stGEAToolbox, please contact me.

Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
+st		+st
@SpatialTranscriptomicsExperiment		@SpatialTranscriptomicsExperiment
example_data		example_data
external		external
private		private
resources		resources
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
cdgea_st.m		cdgea_st.m
cluster_banksy.m		cluster_banksy.m
cluster_resnet18.m		cluster_resnet18.m
i_ctypescore.m		i_ctypescore.m
i_knndist.m		i_knndist.m
i_showimgsamples.m		i_showimgsamples.m
st_anova.m		st_anova.m
st_cluster_img.m		st_cluster_img.m
st_cluster_spo.m		st_cluster_spo.m
st_distgrad.m		st_distgrad.m
st_immidist.m		st_immidist.m
st_multigroupings.m		st_multigroupings.m
st_read10xdir.m		st_read10xdir.m
st_readgeoaccession.m		st_readgeoaccession.m
st_readgeoaccessionST.m		st_readgeoaccessionST.m
st_readsegmenteddir.m		st_readsegmenteddir.m
st_ridgecci.m		st_ridgecci.m
st_ridgenet.m		st_ridgenet.m
st_sampleimg.m		st_sampleimg.m
st_scatter_ste.m		st_scatter_ste.m
st_sce2ste.m		st_sce2ste.m
st_showccires.m		st_showccires.m
st_showccires2.m		st_showccires2.m
st_showccires3.m		st_showccires3.m
stgeatool.m		stgeatool.m
testxcx.m		testxcx.m