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This is a repo for revising elements of "Interactive and Dynamic Graphics for Data Analysis".

HTML 8 2 Updated Feb 12, 2025

Config files used to define parameters specific to compute environments at different Institutions

Nextflow 94 287 Updated Feb 12, 2025

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

Nextflow 59 39 Updated Jan 27, 2025

Test data to be used for automated testing with the nf-core pipelines

115 367 Updated Feb 11, 2025

A library to decompose WDL files into a JSON/YAML, and create a mermaid flowchart

WDL 3 Updated Nov 22, 2024

🌐🌱 A starter repo for building WebGL applications.

TypeScript 48 6 Updated Mar 4, 2023

A list of SaaS, PaaS and IaaS offerings that have free tiers of interest to devops and infradev

HTML 92,246 9,918 Updated Feb 14, 2025

Rust bindings for the Python interpreter

Rust 13,025 802 Updated Feb 14, 2025

PyScript is an open source platform for Python in the browser. Try PyScript: https://pyscript.com Examples: https://tinyurl.com/pyscript-examples Community: https://discord.gg/HxvBtukrg2

Python 18,196 1,454 Updated Feb 7, 2025

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Rust 31,866 2,075 Updated Feb 15, 2025

cuDF - GPU DataFrame Library

C++ 8,675 928 Updated Feb 15, 2025

Static Type Checker for Python

Python 13,831 1,571 Updated Feb 15, 2025

An extremely fast Python linter and code formatter, written in Rust.

Rust 35,807 1,208 Updated Feb 15, 2025

Find dead Python code

Python 3,673 163 Updated Dec 12, 2024

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

R 6,562 259 Updated Dec 10, 2024

Params validation plugin for Nextflow pipelines

Groovy 48 19 Updated Aug 7, 2024

Spike-only SARS-CoV-2 Nextstrain build

Python 2 Updated Dec 13, 2023

Medium length summaries of math subjects like multivariable calculus. Longer than a formula sheet, shorter than a textbook.

TeX 76 11 Updated Jun 11, 2022

A grammar of graphics for comparative genomics

R 645 66 Updated Jan 31, 2025

re-exploration Rust binding to wx

Rust 79 10 Updated Mar 27, 2023

Scripts to wrap Terra API calls for programmatic workflow execution, workspace management, and data export to other platforms. Part of the workflow is specific to my environment, but hopefully it a…

Python 4 Updated Jul 11, 2023

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

WDL 46 18 Updated Feb 14, 2025

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Jupyter Notebook 385 47 Updated Feb 13, 2025

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…

Python 34 5 Updated Feb 15, 2025

Snakemake workflow management system and CLI generation tool

Python 52 4 Updated Jan 29, 2025

UCSC Genome Browser source tree. Stable branch: "beta".

C 229 91 Updated Feb 15, 2025

Dengue antigenic variation and evolutionary dynamics

Jupyter Notebook 9 5 Updated Jan 7, 2022

Save and launch Zoom meetings from the command line.

Python 26 6 Updated Mar 3, 2024
Dockerfile 9 3 Updated Oct 23, 2024

For distributing patric related code

HTML 27 4 Updated Dec 19, 2022
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