index: md5: handle missing files and cloud versioned files missing version_id #1507

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Run time

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Job	Run time
tests (ubuntu-20.04, 3.8)	2m 25s
tests (ubuntu-20.04, 3.9)	2m 37s
tests (ubuntu-20.04, 3.10)	2m 48s
tests (ubuntu-20.04, 3.11)	2m 33s
tests (windows-latest, 3.8)	5m 14s
tests (windows-latest, 3.9)	4m 40s
tests (windows-latest, 3.10)	5m 8s
tests (windows-latest, 3.11)	5m 13s
tests (macos-latest, 3.8)	4m 42s
tests (macos-latest, 3.9)	7m 37s
tests (macos-latest, 3.10)	5m 4s
tests (macos-latest, 3.11)	5m 54s
tests (ubuntu-latest, pypy3.8)	6m 9s
	1h 0m 4s