This is a folk from jrflab/modules. This module is BEING tailored for WGS analysis.

Summary

To start a new project:

        `git clone https://github.com/jrflab/modules.git`

        `./modules/init_project`  or 

        `perl modules/scripts/initProject.pl`

[wiki](https://github.com/jrflab/modules/wiki).

Name		Name	Last commit message	Last commit date
Latest commit History 3,745 Commits
_docs		_docs
aligners		aligners
bam_tools		bam_tools
clonality		clonality
conda_env		conda_env
contamination		contamination
copy_number		copy_number
db		db
default_yaml		default_yaml
export		export
external		external
fastq_tools		fastq_tools
genome_inc		genome_inc
isoforms		isoforms
mut_sigs		mut_sigs
ploidy		ploidy
qc		qc
recurrent_mutations		recurrent_mutations
reference		reference
rnaseq		rnaseq
scripts		scripts
snp6		snp6
summary		summary
sv_callers		sv_callers
test		test
variant_callers		variant_callers
vcf_tools		vcf_tools
virus		virus
.gitignore		.gitignore
.gitmodules		.gitmodules
.travis.yml		.travis.yml
Makefile		Makefile
Makefile.inc		Makefile.inc
README.md		README.md
config.inc		config.inc
init_project		init_project
snpEff.config		snpEff.config