Dockerized OpenVRE

Deployment of a full openVRE-based analysis platform, including:

• openVRE module (frontend and backend): https://github.com/inab/openVRE/tree/dockerized
• Keycloak Authentication server
• Cluster SGE

Architecture

new_dockerized_vre

Getting started

Cloning this directory in your system:

git clone https://gitlab.bsc.es/disc4all/openvre/new_vre.git

cd new_vre

mv new_vre dockerized_vre

cd dockerized_vre 

docker compose build

docker compose up -d 

Fixes

Manually entering the SGEcore container and modify the docker group permission:

docker exec -ti sgecore /bin/bash

in the container -> groupmod -g 120 docker

in the container -> usermod -aG docker application