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75 Open 147 Closed
75 Open 147 Closed
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Issues list

do_scatter is defined in the vignette source code but not available
#260 opened Sep 17, 2024 by MichaelJFlynn
different clustering results
#259 opened Sep 10, 2024 by YuliaInn
integrating snRNA (from multiome dataset) with scRNA public dataset
#258 opened Sep 5, 2024 by Urja25
The error of harmony after subsetting data
#256 opened Aug 21, 2024 by Carrey14
argument 3 matches multiple formal arguments
#255 opened Aug 15, 2024 by Guliariel
1
how to use harmony for Seurat Spatial Data?
#254 opened Jul 24, 2024 by flpxn7
argument 3 matches multiple formal arguments
#253 opened Jul 11, 2024 by jasoncrucify
Gene-level Correction
#252 opened Jul 2, 2024 by DarioS
advice about parameters for integration
#251 opened May 24, 2024 by javiers1983
"Is It Feasible to Use Harmony Directly for Batch Correction in Seurat V5 Instead of “ IntegrateLayers“?"
#249 opened Apr 20, 2024 by Tylesteven
5
Trying to load pbmc.RData from Zenodo
#248 opened Apr 12, 2024 by davetang
2
Can i obtain my original data shape?
#247 opened Mar 6, 2024 by leeleavitt
3
Cannot reproduce Seurat.ipynb vignette; parameters not passed
#243 opened Feb 19, 2024 by Nichal123
3
vars_use Definition Not Explicit
#242 opened Feb 19, 2024 by DarioS
Convergence plot showing bizarre reading, data okay to use?
#241 opened Feb 14, 2024 by jcshuy
2
Plotting Function do_scatter Does Not Exist
#239 opened Feb 2, 2024 by DarioS
1
feature.loadings of harmony is missing in SummarizedExperiment
#238 opened Jan 25, 2024 by xiangpin
Error: matrix multiplication: incompatible matrix dimensions: 100x96490 and 96489x22
#237 opened Jan 17, 2024 by claireanjou
1
Harmony converged after 6 iterations Error in UseMethod(generic = "Key", object = object) : no applicable method for 'Key'... response needed Issue will be closed within a month if no response is provided
#221 opened Nov 19, 2023 by ncedi12
4
RunHarmony on the weights branch errors with incompatible matrix dimensions
#219 opened Nov 9, 2023 by deevdevil88
16
installation issues question Further information is requested response needed Issue will be closed within a month if no response is provided
#217 opened Nov 2, 2023 by vappiah
3
Batch effect seen on Heatmap
#216 opened Oct 27, 2023 by Lucas-Maciel
5
conda install -c bioconda r-harmony failed
#210 opened Oct 8, 2023 by hanguojun007
1
Obtaining batch effect estimates at cluster level question Further information is requested
#199 opened Jul 26, 2023 by wmacnair
1
Integrating pairs of samples separately in a Seurat object question Further information is requested
#196 opened May 19, 2023 by zhang248
ProTip! Updated in the last three days: updated:>2024-09-30.