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Unbiased single-cell transcriptomic data cell type identification

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igordot/clustermole

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clustermole: exploratory scRNA-seq cell type analysis

The clustermole R package (available on CRAN) provides methods to query cell identity markers sourced from a variety of databases. It includes three primary features:

  • a meta-database of human and mouse markers for thousands of cell types
  • cell type prediction based on a set of marker genes
  • cell type prediction based on a table of expression values

Check the documentation website for more information.