AnnoKit

Reference genome annotation file processing toolset

main functions

• searchs: given a genome range, find genes within the range and related information about the gene.

• maps: direct related query between gene name(symbol) and gene ID(Ensembl).

• inquires: given one or more gene names or IDs, query the detailed information of the corresponding genes, transcripts, exons and other related gene structures.

gene structure

eukaryote

prokaryote

install

git clone [email protected]:iOLIGO/AnnoKit.git
pip install AnnoKit/dist/AnnoKit-1.0.0.tar.gz

GTF

gtf file analysis

• GTF