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revert changes in qic.R and anova-geeglm.R
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@@ -2,6 +2,7 @@ LICENSE | |
| .travis.yml | ||
| devel/* | ||
| NAMESPACE_old | ||
| LEGACY.md | ||
| ^CRAN-SUBMISSION$ | ||
| ^cran-comments\.md$ | ||
| ^.*\.Rproj$ | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,3 +1,3 @@ | ||
| Version: 1.3.7 | ||
| Date: 2022-08-05 08:01:41 UTC | ||
| SHA: 0fefd19e8833ffaeeeb4e3fb254a5a8dff5314bf | ||
| Version: 1.3.8 | ||
| Date: 2022-08-12 15:45:04 UTC | ||
| SHA: c2e71af2c0ebd733e45119b0c7129a03dc64eee5 |
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,3 +1,7 @@ | ||
| # geepack v1.3.8 (2022-08-12) | ||
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| * Version 1.3.7 never made it to CRAN for some reason (no changes of NEWS.md detected). Now NEWS.md has different markup. | ||
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| # geepack v1.3.7 (2022-08-04) | ||
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| * Version 1.3.6 never made it to CRAN for some reason (no changes of NEWS.md detected). Now NEWS.md has different markup. | ||
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@@ -51,215 +55,3 @@ | |
| * Maintainer of geepack is now Søren Højsgaard | ||
| * Location of vignette fixed | ||
| * Version 1.2-0 uploaded | ||
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| # Legacy from when Jun Yan was maintainer: | ||
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| 2012-01-27 Jun Yan <[email protected]> | ||
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| * Commented out #undef NDEBUG in geesubs.cc. | ||
| * Added a VecPrint function in utils.cc to print DVector; | ||
| this replaces usage of cerr. | ||
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| 2012-01-09 Jun Yan <[email protected]> | ||
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| * Thank Jeffrey Horner <[email protected]> | ||
| and Cole Beck <[email protected]> for fixing the | ||
| undefined symbol error (see 2011-11-14 entry: | ||
| _Z5ValidIiEN3TNT6VectorIT_EERS3_RNS1_IiEE). | ||
| The template function "Valid" (in original geesubs.cc) | ||
| should actually be in the header file. | ||
| This may fix the compilation error on ubuntu 11.10 too. | ||
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| 2011-11-21 Jun Yan <[email protected]> | ||
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| * Added an example to function relRisk. | ||
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| 2011-11-21 Jun Yan <[email protected]> | ||
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| * Added an example to function compCoef. | ||
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| * Changed the JSS paper year from 2005 to 2006 in CITATION. | ||
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| 2011-11-16 Jun Yan <[email protected]> | ||
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| * Added function relRisk for relative risk regression | ||
| --- regression for binary response with log link. | ||
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| * Added function relRisk for relative risk regression | ||
| --- regression for binary response with log link. | ||
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| * Added function compCoef for comparing coefficients | ||
| of the same sets of covariates between nested models. | ||
| This implements the method of Yan, Aseltine, and Harel | ||
| (2011, JEBS); for independent data, the method reduces | ||
| to Allison (1995, American Journal of Sociology). | ||
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| * Fixed a bug in c++ code in constructing the working | ||
| covariance structure using the regression model of scale. | ||
| Simulation tests show improved efficiency in mean parameter | ||
| estimation when scale regression is present. | ||
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| 2011-11-15 Soren Hojsgaard <[email protected]> | ||
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| * Dependence on the doBy package has been removed. | ||
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| 2011-11-14 Jun Yan <[email protected]> | ||
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| * Added NAMESPACE for to comply with the requirement of R-2.14.0. | ||
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| * Removed the "assert" lines in utils.cc in order not to crash R, | ||
| which is quite rude practice. A "-DNDEBUG" has been added to the | ||
| cppflags in Makevars for a better solution. Due to many asserts | ||
| in tnt, we cannot get rid of the NOTE message completely: | ||
| Found ‘_ZSt4cerr’, possibly from ‘std::cerr’ (C++) | ||
| Found ‘__assert_fail’, possibly from ‘assert’ (C) | ||
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| * Added quote in statements like | ||
| extract(m, "response") to get rid of NOTE: | ||
| geese: no visible binding for global variable ‘response’ | ||
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| * Added a line of | ||
| #undef NDEBUG | ||
| to the beginning of geesubs.cc; thank Brian Ripley for the NMU. | ||
| Still unclear why the error without this line: | ||
| undefined symbol: _Z5ValidIiEN3TNT6VectorIT_EERS3_RNS1_IiEE | ||
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| 2011-02-23 Søren Højsgaard <[email protected]> | ||
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| * In geeglm is checked if the model matrix is rank deficient; if | ||
| so then geeglm exits. Thanks to Jason D Thorpe for pointing this out. | ||
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| * Bug in anova fixed. Thanks to Stefan Boehringer for pointing | ||
| this out. | ||
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| * Version 1.0-18 uploaded. | ||
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| 2010-01-26 Søren Højsgaard <[email protected]> | ||
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| * fixed2Zcor function has been added. This function makes it | ||
| easier to work with a fixed correlation matrix (in particular when | ||
| cluster sizes are not equal). | ||
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| * A vignette on models with unequal cluster size, fixed | ||
| correlation matrices etc. has been added. | ||
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| * Version 1.0-17 uploaded | ||
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| 2008-12-08 Søren Højsgaard <[email protected]> | ||
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| * Bugfix in 1.0.15 caused problem in binomial case using | ||
| cbind(pos,neg). Thanks to Tobias Verbeke. Fixed now. | ||
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| * Bugfix in 1.0.15 caused problem when using variables derived | ||
| from gam package call to geeglm. Thanks to Eric Rexstad. Fixed now. | ||
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| * Using scale.fix argument gave problem in geeglm. Thanks to | ||
| Tobias Verbeke. Fixed now. | ||
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| * Fitting large data set with binomial model and 3 measurements | ||
| per unit using unstructured correlation crashes R. Thanks to | ||
| Tobias Verbeke. Problem has *NOT* been solved but a remark has | ||
| been added to doc file. | ||
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| * Version 1.0-16 uploaded | ||
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| 2008-12-01 Søren Højsgaard <[email protected]> | ||
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| * When a factor has unused levels, the underlying C code | ||
| fails. This is now catured in geeglm. Thanks to Janet Young | ||
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| * tests directory added to package | ||
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| * Version 1.0-15 uploaded | ||
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| 2007-07-13 Søren Højsgaard <[email protected]> | ||
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| * Smaller 'standardization' changes implemented. Thanks to Achim | ||
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| * Version 1.0-14 uploaded | ||
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| 2007-03-21 Søren Højsgaard <[email protected]> | ||
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| * A remark on fixed correlation structures has been added to the | ||
| geeglm.Rd doc file. | ||
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| * A Wishlist file has been added | ||
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| * Version 1.0-13 uploaded | ||
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| 2007-03-21 Søren Højsgaard <[email protected]> | ||
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| * Bug in geeglm fixed so that it now works with a fixed | ||
| correlation structure. Thanks to Ulrich Halekoh for the fix. | ||
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| 2006-02-13 Jun Yan <[email protected]> | ||
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| * Bug in genZcor and genZodds fixed. | ||
| Thanks to Chongzhi Di <[email protected]>. | ||
| Previously, the matrice generated by genZcor/genZodds are | ||
| wrong when the number of unique waves is greater than or | ||
| equal to 10. | ||
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| 2006-01-24 Søren Højsgaard <[email protected]> | ||
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| * Bug in anova.geeglm fixed (showed up when there was only one | ||
| term on the right hand side of ~). | ||
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| * geeglm only works on complete data. This has been pointed out in | ||
| the man pages. (At some point of time, a proper na.action should be | ||
| taken). | ||
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| * All datasets are saved as .txt files (previously some were saved | ||
| as .rda files but that caused problems in building the package on | ||
| windows xp). | ||
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| 2005-08-13 Jun Yan <[email protected]> | ||
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| * The working correlation structure can now be "fixed". | ||
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| 2005-06-13 Søren Højsgaard <[email protected]> | ||
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| * Søren Højsgaard has modified the geeglm function so that it can | ||
| take the 'waves' argument which is used for explicitely specifying | ||
| the ordering of repeated measurements on the same unit. geeglm can | ||
| also take the 'zcor' argument for a user defined working | ||
| correlation structure. | ||
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| * A documentation file for the genZcor | ||
| function has been added. | ||
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| * All data sets provided are now saved as | ||
| text files. | ||
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| * ordgee has been modified to check if the response variable is an | ||
| ordered factor. | ||
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| * geeglm can now take the argument std.err which specifies the | ||
| type of variance estimate to be calculated. | ||
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| 2005-05-11 Søren Højsgaard <[email protected]> | ||
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| * Søren Højsgaard has modified the anova function to make it | ||
| calculate the correct degrees of freedom. | ||
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| 2005-04-11 Jun Yan <[email protected]> | ||
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| * Søren Højsgaard made some minor changes to geeglm - | ||
| basically, that geese.control did not work. Now it does. | ||
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| 2005-02-09 Jun Yan <[email protected]> | ||
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| * Søren Højsgaard joined the development with geeglm, which | ||
| "works like" glm and returns an object which is similar to | ||
| a glm object. Residuals and predicted values can be extracted | ||
| using the generic functions as with a glm object. | ||
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| * An important feature of geeglm, is that an anova method | ||
| exists for these models. | ||
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