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  1. TOGA TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…

    Python 195 27

  2. make_lastz_chains make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    Python 59 12

  3. GenomeAlignmentTools GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    C 58 16

  4. CESAR2.0 CESAR2.0 Public

    C 28 10

  5. ForwardGenomics ForwardGenomics Public

    Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

    Perl 24 8

  6. GeneLossPipe GeneLossPipe Public

    Perl 24 7

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