This is an interactive Shiny-based app that visualises the analysed data for CRISPR screens using the PbHiT system in the rodent malaria parasite Plasmodium berghei” as described in Jonsdottir et al. DOI: https://doi.org/10.1101/2024.04.20.590404
Generated by the Bushell lab at Umeå University. http://www.bushelllab.com/
MIT license
- count.R -- takes all FASTQ files and outputs count matrices
- grstats.R -- takes count files and generates statistics
- crispr_methods_paper.R -- generates plots for the paper
- crispr_pools/* -- processed count files and metadata
These are related to the shiny app:
- global.R -- Load files into memory
- server.R -- Server backend
- start.R -- For starting the server
- Makefile -- For starting the server
- ui.R -- User interface declaration