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Unit Test Compatibility

Unit Test Compatibility #38

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Unit Test Compatibility

Unit Test Compatibility #38

Workflow file for this run

.github/workflows/unit-tests.yml at 20d186c
name: Unit Test Compatibility
on:
push:
branches: [main]
pull_request:
branches: [main]
schedule:
- cron: '0 0 * * *' # daily
workflow_dispatch:
pull_request_target:
types: [opened, synchronize, reopened]
jobs:
test:
runs-on: ubuntu-latest # TODO: make this `["ubuntu-latest", "windows-latest", "macos-latest"]`?
strategy:
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install core PyHC packages # Install all dependencies listed in pyproject.toml
run: |
python -m pip install --upgrade pip
pip install .
- name: Clone and test hapiclient
run: |
git clone https://github.com/hapi-server/client-python.git
cd client-python
pip install hapiplot deepdiff
pytest
# Kamodo package has no unit tests
# - name: Clone and test kamodo
# run: |
# git clone https://github.com/nasa/Kamodo.git
# cd Kamodo
# pip install -r requirements.txt
# # pip install .
# pytest
- name: Clone and test plasmapy
if: matrix.python-version != '3.9' # Exclude PlasmaPy for Python 3.9
run: |
git clone https://github.com/PlasmaPy/PlasmaPy.git
cd PlasmaPy
pip install hypothesis
# Ignoring 6 tests that are throwing errors & 18 failures
# pytest --continue-on-collection-errors -k "not test_detector_stacks and not test_synthetic_radiography and not test_atomic and not test_particle_tracker and not test_save_routines and not test_downloader and not test_Particle_class[neutron-kwargs0-expected_dict0] and not test_Particle_class[p+-kwargs1-expected_dict1] and not test_Particle_class[H-kwargs2-expected_dict2] and not test_Particle_class[e--kwargs5-expected_dict5] and not test_custom_particle_str[kwargs1-I2] and not test_isotopes_have_equivalent_ionization_energy and not test_different_ions_have_different_ionization_energy and not test_zero_charge_ionization_energy and not test_deuterium_ionization_energy and not test_particle_ionization_energy[H-expected_ionization_energy0] and not test_particle_ionization_energy[He-expected_ionization_energy1] and not test_particle_ionization_energy[Li-expected_ionization_energy2] and not test_undefined_ionization_energy and not test_undefined_electron_binding_energy and not test_warning_on_use_of_binding_energy and not test_deuterium_electron_binding_energy and not test_other_isotopes_electron_binding_energy and not test_isotope_ion_electron_binding_energy"
pytest --continue-on-collection-errors \
-k "not test_detector_stacks and not test_synthetic_radiography and not test_atomic and not test_particle_tracker and not test_save_routines and not test_downloader and not test_Particle_class[neutron-kwargs0-expected_dict0] and not test_Particle_class[p+-kwargs1-expected_dict1] and not test_Particle_class[H-kwargs2-expected_dict2] and not test_Particle_class[e--kwargs5-expected_dict5] and not test_custom_particle_str[kwargs1-I2] and not test_isotopes_have_equivalent_ionization_energy and not test_different_ions_have_different_ionization_energy and not test_zero_charge_ionization_energy and not test_deuterium_ionization_energy and not test_particle_ionization_energy[H-expected_ionization_energy0] and not test_particle_ionization_energy[He-expected_ionization_energy1] and not test_particle_ionization_energy[Li-expected_ionization_energy2] and not test_undefined_ionization_energy and not test_undefined_electron_binding_energy and not test_warning_on_use_of_binding_energy and not test_deuterium_electron_binding_energy and not test_other_isotopes_electron_binding_energy and not test_isotope_ion_electron_binding_energy and not test_angular_freq_to_hz_preserves_signature and not test_validate_quantities_postponed_annotations" \
--ignore=tests/diagnostics/charged_particle_radiography/test_detector_stacks.py \
--ignore=tests/diagnostics/charged_particle_radiography/test_synthetic_radiography.py \
--ignore=tests/particles/test_atomic.py \
--ignore=tests/simulation/test_particle_tracker.py \
--ignore=tests/simulation/test_save_routines.py \
--ignore=tests/utils/data/test_downloader.py
# pysat always fails with "error in Sphinx setup command: use_2to3 is invalid."
# - name: Clone and test pysat
# continue-on-error: true
# run: |
# git clone https://github.com/pysat/pysat.git
# cd pysat
# pip install -r requirements.txt
# pip install -r test_requirements.txt
# pytest
- name: Clone and test pyspedas
run: |
git clone https://github.com/spedas/pyspedas.git
cd pyspedas
pip install -r requirements.txt
pip install mth5
# Ignore 6 known failing tests, for now
pytest -k "not test_degpol and not test_elliptict and not test_helict and not test_powspec and not test_waveangle and not test_read_epde_calibration_data"
- name: Clone and test spacepy
run: |
git clone https://github.com/spacepy/spacepy.git
cd spacepy/tests
# python test_all.py
# Manually run all test files except 5 that cause problems
python test_ae9ap9.py
python test_base.py
python test_coordinates.py
python test_ctrans.py
python test_data_assimilation.py
python test_datamanager.py
python test_igrf.py
python test_irbempy.py
python test_lanlstar.py
python test_lib.py
python test_omni.py
python test_plot.py
python test_plot_utils.py
python test_poppy.py
python test_pybats.py
python test_rst.py
python test_seapy.py
python test_spectrogram.py
python test_testing.py
python test_time.py
# python test_toolbox.py
# SunPy always fails with "pytest: error: unrecognized arguments: --doctest-rst --dist --arraydiff"
# - name: Clone and test sunpy
# continue-on-error: true
# run: |
# git clone https://github.com/sunpy/sunpy.git
# cd sunpy
# # Extract dependencies from pyproject.toml
# python -c "import tomli; f=open('pyproject.toml', 'rb'); pyproject=tomli.load(f); f.close(); dependencies=pyproject.get('project', {}).get('dependencies', []); req_file=open('req_file.txt', 'w'); req_file.write('\n'.join(dependencies)); req_file.close()"
# pip install -r req_file.txt
# pytest