Merge pull request #39 from harmsm/master

few changes to docs

README.md

@@ -2,12 +2,11 @@
 A python software package for analyzing Isothermal Titration Calorimetry
 experiments.
 
- + [Documentation](https://pytc.readthedocs.io/en/latest/)
+ + [Full documentation](https://pytc.readthedocs.io/en/latest/)
  + [Graphical User Interface](https://github.com/harmslab/pytc-gui)
- + Try it out: [![Binder](http://mybinder.org/badge.svg)](http://mybinder.org:/repo/harmslab/pytc-binder)
 
 ## Quick Start
- + Install via pip `sudo python3 install pytc-fitter` (Mac/Linux), `python3 -m pip install pytc-fitter` (Windows)
+ + Install via pip `sudo pip3 install pytc-fitter` (Mac/Linux), `python3 -m pip install pytc-fitter` (Windows)
  + Alternatively, clone from github and install 
     ```
     git clone https://github.com/harmslab/pytc.git

README.rst

@@ -32,15 +32,6 @@ Features
  + Easy integration with `jupyter <https://jupyter.org/>`_ notebooks for 
    writing custom fitting scripts.
 
-Try it out!
-===========
-
-We have posted a `jupyter <https://jupyter.org/>`_ notebook demonstrating the
-capabilities of the API on `binder <http://mybinder.org:/repo/harmslab/pytc-binder>`_.
-
-.. image:: http://mybinder.org/badge.svg :target: http://mybinder.org:/repo/harmslab/pytc-binder
-
-
 API Quick Start
 ===============
 

docs/source/conf.py

@@ -59,9 +59,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '0.1'
+version = '1.0'
 # The full version, including alpha/beta/rc tags.
-release = '0.1'
+release = '1.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

docs/source/index.rst

@@ -30,22 +30,13 @@ Features
  + Easy integration with `jupyter <https://jupyter.org/>`_ notebooks for 
    writing custom fitting scripts.
 
-Try it out!
-===========
-
-We have posted a `jupyter <https://jupyter.org/>`_ notebook demonstrating the
-capabilities of the API on `binder <http://mybinder.org:/repo/harmslab/pytc-binder>`_.
-
-.. image:: http://mybinder.org/badge.svg :target: http://mybinder.org:/repo/harmslab/pytc-binder
-
-
 API Quick Start
 ===============
 
 If you already have a python3-based scientific computing environment installed, 
 you can start using the API by:
 
-.. sourcecode ::
+.. sourcecode:: bash
 
     # Install pytc
     sudo pip3 install pytc-fitter
@@ -80,8 +71,10 @@ Fit a :math:`Ca^{2+}/EDTA` binding experiment to a single-site binding model.
     g.plot()
     print(g.fit_as_csv)
 
-GUI Screen shots
-================
+GUI
+===
+
+`GUI docs <https://pytc-gui.readthedocs.io/en/latest/>`_.
 
 .. image:: images/gui_01.png
 .. image:: images/gui_02.png
@@ -90,8 +83,8 @@ Documentation
 =============
 
  + `Installation <installation.html>`_
- + `Fitting models using the script API <http://mybinder.org:/repo/harmslab/pytc-binder>`_.
- + `Fitting models using the GUI API <https://pytc-gui.readthedocs.io/en/latest/>`_.
+ + Fitting models using the script API `see demos/Demo.ipynb. <https://github.com/harmslab/pytc/blob/master/demos/Demo.ipynb>`_.
+ + `Fitting models using the GUI <https://pytc-gui.readthedocs.io/en/latest/>`_.
  + `Fitting and statistics <statistics.html>`_.
  + `Description of individual experiment models included in package <indiv_models.html>`_.
  + `Description of global fits included in package <global_models.html>`_.