UMItools

Tools for UMI related works

• umi_extract.c

  Code to extract UMI sequences from the third fastq file.
  Usage: umi_extract fq1 fq2 umi_fq

• FilterSingleUMIconsensus.sh

  Shell script to filter single-UMI consensus reads by group size.
  Usage: sh FilterSingleUMIconsensus.sh INPUT_BAM OUTPUT_BAM MIN_READ

• FilterDuplexUMIconsensus.sh

  Shell script to filter duplex-UMI consensus reads by group sizes.
  Usage: sh FilterDuplexUMIconsensus.sh INPUT_BAM OUTPUT_BAM MIN_READS