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28 Open 19 Closed
28 Open 19 Closed
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Issues list

Bug: uniprotID_pathogenicity_session.py strand needs to be specified bug Something isn't working
#51 opened Aug 27, 2024 by Claudia518
Bug: uniprotID_pathogenicity_session.py coloring needs to match standard blue-white-red bug Something isn't working
#50 opened Aug 27, 2024 by Claudia518
Feat: Add PDB file screenshot with coloring according to B-factors to output and in the report enhancement New feature or request
#45 opened Aug 22, 2024 by berntpopp
@berntpopp
1
Feat: Generate session for Chimera/PyMOL to open the PDB file and color according to B-factors enhancement New feature or request
#44 opened Aug 22, 2024 by berntpopp
@berntpopp
1
Bug: generate_pathogenicity_pdb no longer modifies PDB files bug Something isn't working
#43 opened Aug 22, 2024 by berntpopp
@berntpopp
Bug: PDB file is named after UniProt, should also contain the source of the file
#42 opened Aug 22, 2024 by berntpopp
@berntpopp
Docs: Update Documentation and Installation Instructions documentation Improvements or additions to documentation
#41 opened Aug 22, 2024 by berntpopp
Feat: Add a Logo to the Repository and CLI enhancement New feature or request
#40 opened Aug 22, 2024 by berntpopp
Bug: Error Fetching ClinVar Summaries bug Something isn't working
#39 opened Aug 22, 2024 by berntpopp
Feat: Allow Output Image Type Selection enhancement New feature or request
#38 opened Aug 22, 2024 by berntpopp Improve plots and outputs
Feat: Implement Interactive CLI enhancement New feature or request
#37 opened Aug 22, 2024 by berntpopp
Feat: Ensure Correct Mapping Between Gene Transcript, UniProt, and PDB enhancement New feature or request
#36 opened Aug 22, 2024 by berntpopp
Feat: Add Support for Custom Mutations in Plots and PDB enhancement New feature or request
#35 opened Aug 22, 2024 by berntpopp Improve plots and outputs
Feature Request: Adapt Amissense Tool to Generate JSON Files Following New Schema enhancement New feature or request
#32 opened Aug 22, 2024 by berntpopp
@berntpopp
1
Implement Testing: Test Coverage and CI Integration enhancement New feature or request
#30 opened Aug 22, 2024 by berntpopp
Refactor: Ensure Consistent Formatting and Linting refactor Refactor code
#29 opened Aug 22, 2024 by berntpopp
Feat: Add Progress Bars for Long-Running Processes enhancement New feature or request
#28 opened Aug 22, 2024 by berntpopp
Refactor: Consolidate PDB Download Logic refactor Refactor code
#24 opened Aug 22, 2024 by berntpopp Unify identifier logic
Refactor: Regex in clinvar.py
#22 opened Aug 22, 2024 by berntpopp
Feat: Unit Tests enhancement New feature or request
#21 opened Aug 22, 2024 by berntpopp
Feat: Generate an HTML Report enhancement New feature or request
#20 opened Aug 22, 2024 by berntpopp Improve plots and outputs
Feat: Interactive Plots
#19 opened Aug 22, 2024 by berntpopp Improve plots and outputs
@berntpopp
Feat: Caching Mechanism for API Calls enhancement New feature or request
#18 opened Aug 22, 2024 by berntpopp
Refactor: Subcommand Abstraction
#17 opened Aug 22, 2024 by berntpopp
Refactor: Improve Argument Parsing refactor Refactor code
#16 opened Aug 22, 2024 by berntpopp
ProTip! Exclude everything labeled bug with -label:bug.