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1. bigWigVis bigWigVis Public

   Visualize bigWig files of RNA-seq data (supported by pyGenomeTracks)

   Python 2

2. transana transana Public

   transcript level expression analysis using Drosophila RNA-seq data by salmon and tximport

3. VisualizeBamInUCSC VisualizeBamInUCSC Public

   Visualize bam (and bigWig) in the UCSC browser

   Shell 1

4. ML ML Public

   Use machine learning (Support Vector Machine) to predict orthologs based on sequential similarity

   Jupyter Notebook

5. dNdS dNdS Public

   A perl script to calculate dN/dS in batch based on Nei-Gojobori Method (the same as MEGA)

   Perl 1 1

6. DE DE Public

   Differential expression analyses of RNA-seq data

   HTML