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[query] Teach hail to export a VDS to an SVCR-VCF #14743

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Oct 30, 2024
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31 changes: 17 additions & 14 deletions hail/python/hail/vds/__init__.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
from . import combiner
from .combiner import load_combiner, new_combiner
from .functions import lgt_to_gt, local_to_global
from .impex import export_vcf, import_vcf
from .methods import (
filter_chromosomes,
filter_intervals,
Expand All @@ -22,26 +23,28 @@

__all__ = [
'VariantDataset',
'read_vds',
'combiner',
'export_vcf',
'filter_chromosomes',
'filter_intervals',
'filter_samples',
'filter_variants',
'filter_chromosomes',
'sample_qc',
'split_multi',
'to_dense_mt',
'to_merged_sparse_mt',
'combiner',
'load_combiner',
'new_combiner',
'write_variant_datasets',
'segment_reference_blocks',
'interval_coverage',
'import_vcf',
'impute_sex_chr_ploidy_from_interval_coverage',
'impute_sex_chromosome_ploidy',
'truncate_reference_blocks',
'merge_reference_blocks',
'interval_coverage',
'lgt_to_gt',
'load_combiner',
'local_to_global',
'merge_reference_blocks',
'new_combiner',
'read_vds',
'sample_qc',
'segment_reference_blocks',
'split_multi',
'store_ref_block_max_length',
'to_dense_mt',
'to_merged_sparse_mt',
'truncate_reference_blocks',
'write_variant_datasets',
]
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