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A C++ implementation of the DOCKS algorithm from Orenstein et al 2016

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docks_dot_cpp

A C++ implementation of the DOCKS algorithm from Orenstein et al 2016 for binary alphabets. The original Java implementation of DOCKS is here

Running

./docks_dot_cpp <k> <w> <decycling.txt>

is equivalent to running

java -jar DOCKS.jar <k> <w+k-1> <decycling.txt> 1

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A C++ implementation of the DOCKS algorithm from Orenstein et al 2016

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