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10 Open 8 Closed
10 Open 8 Closed
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Issues list

Update StringTie params
#35 opened Sep 14, 2017 by jasonwalker80
Grep for and remove unnecessary references to original Tuxedo
#25 opened Nov 14, 2016 by jasonwalker80
5 tasks
Use/download R Script to run ballgown
#23 opened Nov 10, 2016 by jasonwalker80
Replace iGenomes with HISAT2 bundles.
#22 opened Nov 9, 2016 by jasonwalker80
Work on Differential Splicing module after Stringtie/Ballgown conversion
#20 opened Nov 8, 2016 by jasonwalker80
Replace htseq-count with featureCounts
#19 opened Nov 8, 2016 by jasonwalker80
CWL/Docker pipeline that can be run locally, serially with cwl-runner
#13 opened Oct 19, 2016 by jasonwalker80
Make RSeQC required
#10 opened Oct 7, 2016 by jasonwalker80
Incorporate the 'new-Tuxedo' nature protocols data into Practical Exercise 5
#9 opened Oct 7, 2016 by jasonwalker80
1
Convert from samtools to sambamba
#8 opened Oct 7, 2016 by jasonwalker80
1
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