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  1. kgbio kgbio Public

    My one-stop-shop for bioinformatics utilities that I have written over the years.

    Python

  2. nextflow-io/nextflow nextflow-io/nextflow Public

    A DSL for data-driven computational pipelines

    Groovy 2.8k 635

  3. deepvariant deepvariant Public

    Forked from google/deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python

  4. multi_padlock_design multi_padlock_design Public

    Forked from Moldia/multi_padlock_design

    Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling

    Python

  5. pySCENIC pySCENIC Public

    Forked from aertslab/pySCENIC

    pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

    Python

  6. igvteam/igv-notebook igvteam/igv-notebook Public

    Module for embedding igv.js in an IPython notebook

    JavaScript 67 13