Committing all of FA22 local edits

.gitignore

@@ -47,3 +47,8 @@ vignettes/*.pdf
 
 **/data/**
 *.ipynb
+
+# Compressed files
+*.tgz
+*.zip
+*.gz

modules/module_1/Notebooks/TemporaryDirectory/myOlderFile.txt

@@ -0,0 +1 @@
+Hello World!

modules/module_1/Notebooks/tail.txt

@@ -0,0 +1,10 @@
+TGGGTGTTATAGGTAAATGGGACAGGGTATAGACCGCTGAGGCAAGTGCCGTGTATGGTG
+ATGTGGTATGGTATCGAGTACCGATGGAGTGAGAGATGGCCTTGGTGTAGAGTATTATGG
+CGGGTAAGTTAGATGATGTATTGTTTACGTTATATTTGTTTAAATTGGATTTGTTTACAT
+TAGATTTGTTTACATTTCAATATATCAATGGAGGGTATGTAGCATTATGGTAAGTAGCAC
+GTGGTAGATGGGGATTGTAGGTGGATGGTAGGATGAGTGGTAGTGAGAGTTGGATAAGAT
+ATATTGGGCAGGGGATAGATGGTTGTTGGGGTGTGGTGATGGATAGTGAGTGGATAGTGA
+GTGGATGGATGGTGGAGTGGGGGAATGAGACAGGGCATGGGGTGGTGAGGTAAGTGCCGT
+GGATTGTGATGATGGAGAGGGAGGGTAGTTGACATGGAGTTAGAATTGGGTCAGTGTTAG
+TGTTAGTGTTAGTATTAGGGTGTGGTGTGTGGGTGTGGTGTGGGTGTGGGTGTGGGTGTG
+GGTGTGGGTGTGGGTGTGGTGTGGTGTGTGGGTGTGGTGTGGGTGTGGTGTGTGTGGG

modules/module_10/TFs.tsv

@@ -0,0 +1,287 @@
+Fbxl19
+Thyn1
+Sgsm2
+Elk1
+Pin1
+Safb
+Fiz1
+Prr12
+Camta2
+Myt1l
+E2f4
+Deaf1
+Thap4
+Rexo4
+Atf2
+Csrnp3
+Scrt1
+Thap7
+Purg
+Mbd3
+Srebf2
+Spen
+Nme2
+Creb1
+Dpf1
+Cebpz
+Akap8l
+Baz2a
+Maz
+Setdb1
+Camta1
+Rfx7
+Cxxc4
+Rela
+Mecp2
+Gtf2i
+Glyr1
+Preb
+Ubp1
+Hmgn3
+Rxrb
+Cxxc1
+Foxk2
+Flywch1
+Foxk1
+Crebzf
+Gatad2a
+Neurod6
+Pa2g4
+Klf16
+Znf512b
+Nkrf
+Jund
+Zscan18
+Pou6f1
+Adnp
+Yy1
+Csrnp2
+Nfyb
+Ctcf
+Zbtb45
+Arnt
+E4f1
+Sox12
+Ncoa1
+Gabpa
+Zfp41
+Thra
+Prmt3
+Thap3
+Rbpj
+Ash1l
+Atf4
+Meis3
+Arnt2
+Thap11
+Smad4
+Cic
+Gmeb2
+Zbtb11
+Irf3
+Srf
+Safb2
+Vezf1
+Usf2
+Akap8
+Zzz3
+Pcgf2
+Phf20
+Tef
+Gtf3a
+Tcf3
+Zfp62
+Tsc22d1
+Bhlhe22
+Zfp1
+Scrt2
+Hmg20a
+Foxg1
+Cc2d1a
+Tcf12
+Sox11
+Hbp1
+Cebpg
+Bptf
+Sox4
+Zbtb33
+Patz1
+Sp3
+Foxj3
+Mlx
+Brf2
+Dmtf1
+Tbp
+Peg3
+Cux1
+Tbr1
+Zfp90
+Prdm4
+Foxj2
+Pou3f3
+Zfp28
+Zbed4
+Nr2f1
+Nfat5
+Prdm2
+Pou3f2
+Esrra
+Znf326
+Creb3
+Myc
+Smad1
+Hivep2
+Son
+Zkscan2
+Drap1
+Cenpb
+Elf2
+Chchd3
+Snapc2
+Mef2a
+Smad5
+Pogk
+Rbak
+Snapc4
+Mafg
+Hsf1
+Mtf2
+Pcgf6
+Mxd4
+Tcf4
+Nr1h2
+Arid2
+Kcmf1
+Mnt
+Tcf20
+Cdc5l
+Jun
+Dzip1
+Insm1
+Sall2
+Atf6b
+Bcl11a
+Dr1
+Terf2
+Gtf2b
+Foxp4
+Mycn
+Rlf
+Hsf2
+Zxdc
+Pbx1
+Prdm8
+Kdm5b
+Zscan21
+Ankzf1
+Nfe2l1
+Zbtb6
+Zkscan1
+Zbtb17
+Hmga1
+Mef2d
+Bach1
+Nfib
+Rbck1
+Wiz
+Nrf1
+Atmin
+Ahdc1
+Ncoa2
+Lhx2
+Meis2
+Gatad2b
+Nfia
+Klf7
+Setbp1
+Neurod2
+Topors
+Foxp1
+Zbtb22
+Xpa
+Gzf1
+Nfix
+Hif1a
+Pbx2
+Zbtb12
+Hmbox1
+Klf13
+Mbd6
+Fezf2
+Skil
+Ski
+Max
+Gpbp1
+Nfya
+Kdm2a
+Xbp1
+Mlxip
+Zbtb43
+Satb1
+Mef2c
+Hes6
+Klf6
+Hivep1
+Tfdp1
+Rfx1
+Cggbp1
+Dot1l
+Nfx1
+Stat2
+Cenpt
+Ahctf1
+Zfp2
+Ybx1
+Usf1
+Zeb2
+Jazf1
+Klf11
+Bach2
+Pou3f1
+Scmh1
+Rfx3
+Cbx2
+Dnttip1
+Emx1
+Zfp82
+Foxo6
+Zfhx2
+Zfp91
+Arntl
+Zbtb5
+Prdm15
+Mbd1
+Ddit3
+Cux2
+Bcl11b
+Zkscan3
+Nfyc
+Satb2
+Zfp30
+Zgpat
+Tet3
+Gmeb1
+Zscan2
+Sox5
+L3mbtl3
+Zik1
+Kin
+Kdm2b
+Phf21a
+Nr1d1
+Tshz3
+Gtf2ird1
+Glis2
+Nfe2l3
+Nfil3
+Zfp57
+Otx1
+Trafd1
+Tbpl1
+Zbtb34
+Irf9
+Dnmt1
+Nr4a3
+Phf1
+Tet2
+Osr1