Update to layout version 3 OME-XML metadata location

glencoesoftware · Apr 12, 2021 · 379127a · 379127a
1 parent bd329a4
commit 379127a
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/src/main/java/com/glencoesoftware/pyramid/PyramidFromDirectoryWriter.java b/src/main/java/com/glencoesoftware/pyramid/PyramidFromDirectoryWriter.java
@@ -258,7 +258,7 @@ private Path getMetadataFile() {
    * @return Path representing the expected OME-XML metadata file
    */
   private Path getOMEXMLFile() {
-    return getZarr().resolve(OMEXML_FILE);
+    return getZarr().resolve("OME").resolve(OMEXML_FILE);
   }
 
   /**

diff --git a/src/test/java/com/glencoesoftware/raw2ometiff/test/ConversionTest.java b/src/test/java/com/glencoesoftware/raw2ometiff/test/ConversionTest.java
@@ -68,7 +68,8 @@ void assertBioFormats2Raw(String...additionalArgs) throws IOException {
       converter = new Converter();
       CommandLine.call(converter, args.toArray(new String[]{}));
       Assert.assertTrue(Files.exists(output.resolve(".zattrs")));
-      Assert.assertTrue(Files.exists(output.resolve("METADATA.ome.xml")));
+      Assert.assertTrue(Files.exists(
+        output.resolve("OME").resolve("METADATA.ome.xml")));
     }
     catch (RuntimeException rt) {
       throw rt;