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Merge pull request #37 from chris-allan/releases-in-readme
Add more "release" style documentation to README
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@@ -12,26 +12,44 @@ Requirements | |
libblosc (https://github.com/Blosc/c-blosc) version 1.9.0 or later must be installed separately. | ||
The native libraries are not packaged with any relevant jars. See also note in n5-zarr readme (https://github.com/saalfeldlab/n5-zarr/blob/0.0.2-beta/README.md) | ||
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Usage | ||
===== | ||
* Mac OSX: `brew install c-blosc` | ||
* Ubuntu 18.04+: `apt-get install libblosc1` | ||
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Installation | ||
============ | ||
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1. Download and unpack a release artifact: | ||
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https://github.com/glencoesoftware/raw2ometiff/releases | ||
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Development Installation | ||
======================== | ||
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1. Clone the repository: | ||
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Build with Gradle: | ||
git clone [email protected]:glencoesoftware/raw2ometiff.git | ||
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gradle clean build | ||
2. Run the Gradle build as required, a list of available tasks can be found by running: | ||
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Unpack the distribution: | ||
./gradlew tasks | ||
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cd build/distributions | ||
unzip raw2ometiff-$VERSION.zip | ||
cd raw2ometiff-$VERSION | ||
Eclipse Configuration | ||
===================== | ||
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1. Run the Gradle Eclipse task: | ||
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./gradlew eclipse | ||
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Usage | ||
===== | ||
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Run the conversion (Bio-Formats 6.x): | ||
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bin/raw2ometiff tile_directory pyramid.ome.tiff | ||
raw2ometiff tile_directory pyramid.ome.tiff | ||
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or generate a 5.9.x-compatible pyramid: | ||
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bin/raw2ometiff tile_directory pyramid.tiff --legacy | ||
raw2ometiff tile_directory pyramid.tiff --legacy | ||
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The input tile directory must contain a full pyramid in a Zarr or N5 container. | ||
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@@ -45,3 +63,9 @@ Areas to improve | |
* Compatibility with both iSyntax and .mrxs | ||
- map JSON metadata to OME-XML (magnification etc.) | ||
- fix tile sizes used when downsampling (TIFF input only) | ||
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License | ||
======= | ||
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The converter is distributed under the terms of the GPL license. | ||
Please see `LICENSE.txt` for further details. |