Add `specify integration` subcommand for post-init integration management by Copilot · Pull Request #2083 · github/spec-kit

Copilot · 2026-04-03T19:29:09Z

Integrations can currently only be configured during specify init. This adds a specify integration subcommand group for managing integrations in existing projects, following the established specify <noun> <verb> pattern used by extensions and presets.

Commands

specify integration list — table of available integrations with installed status from .specify/integration.json
specify integration install <key> — writes files + manifest, updates integration.json and init-options.json
specify integration uninstall [key] — hash-safe removal via IntegrationManifest; preserves modified files, reports skipped
specify integration switch <target> — reads current from integration.json, teardown → setup; shared infra untouched

specify integration list
specify integration install copilot
specify integration uninstall copilot
specify integration switch claude --script sh

Implementation

Reuses existing IntegrationManifest hash tracking and IntegrationBase.setup()/teardown() — no new install/uninstall mechanics
Extracted _update_init_options_for_integration() helper to deduplicate init-options update logic between install and switch
_resolve_script_type() falls back to init-options.json then platform default when --script is omitted
_parse_integration_options() handles --integration-options passthrough for integrations that declare custom options (e.g. generic's --commands-dir)

Tests

21 tests in tests/integrations/test_integration_subcommand.py covering:

All four commands with validation, error, and happy paths
Full lifecycle: install → modify file → uninstall → verify modified file preserved
Switch preserves shared infra (.specify/scripts/, .specify/templates/)

Implements the `specify integration` subcommand group for managing integrations in existing projects after initial setup: - `specify integration list` — shows available integrations and installed status - `specify integration install <key>` — installs an integration into existing project - `specify integration uninstall [key]` — hash-safe removal preserving modified files - `specify integration switch <target>` — uninstalls current, installs target Follows the established `specify <noun> <verb>` CLI pattern used by extensions and presets. Shared infrastructure (scripts, templates) is preserved during uninstall and switch operations. Agent-Logs-Url: https://github.com/github/spec-kit/sessions/1cca6c84-3e12-465d-88b8-a646d3504f63 Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>

tests/integrations/test_integration_subcommand.py

- Extract _update_init_options_for_integration() to deduplicate init-options update logic between install and switch commands - Fix _parse_integration_options return type to dict[str, Any] | None Agent-Logs-Url: https://github.com/github/spec-kit/sessions/1cca6c84-3e12-465d-88b8-a646d3504f63 Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>

Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>

Copilot

Pull request overview

Adds a new specify integration CLI subcommand group to manage AI agent integrations in an already-initialized spec-kit project.

Changes:

Added specify integration subcommands: list, install, uninstall, and switch.
Introduced helper utilities for reading/writing .specify/integration.json and parsing --integration-options.
Added a comprehensive new test suite covering the new subcommands and lifecycle behaviors.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Implements the new `integration` Typer subcommands and supporting helper functions.
`tests/integrations/test_integration_subcommand.py`	Adds end-to-end CLI tests for list/install/uninstall/switch, including manifest-safe teardown behavior.

Copilot's findings

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Files reviewed: 2/2 changed files
Comments generated: 6

src/specify_cli/__init__.py

…ix metadata cleanup - Add _normalize_script_type() to validate script type against SCRIPT_TYPE_CHOICES - Handle --name=value syntax in _parse_integration_options() - Clear init-options.json keys in no-manifest uninstall early-return path - Clear stale metadata between switch teardown and install phases - Add 5 tests covering the new edge cases

Copilot

Pull request overview

Adds a new specify integration subcommand group so integrations can be managed after project initialization, using the existing integration setup/teardown + manifest hash-tracking mechanisms.

Changes:

Introduces specify integration list/install/uninstall/switch commands and supporting helpers.
Adds parsing for --integration-options passthrough to integrations that declare custom options.
Adds a comprehensive new test suite covering the new subcommands and lifecycle scenarios.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds the `integration` Typer sub-app and implements list/install/uninstall/switch flows.
`tests/integrations/test_integration_subcommand.py`	Adds end-to-end CLI tests for all new integration subcommands and edge cases.

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Files reviewed: 2/2 changed files
Comments generated: 3

src/specify_cli/__init__.py

tests/integrations/test_integration_subcommand.py

…-options - --force on install now rejects overwriting a different integration; users must use 'specify integration switch' instead - _update_init_options_for_integration() now accepts and persists script_type - Fix misleading test docstring for switch metadata test - Add test_force_blocked_with_different_integration

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI agent integrations in already-initialized spec-kit projects (list/install/uninstall/switch), reusing the existing integration setup/teardown + manifest hashing mechanics and adding dedicated CLI tests.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands and supporting helpers (integration.json read/write, script-type resolution, init-options updates, integration-options parsing).
Implements install/uninstall/switch flows using IntegrationManifest + IntegrationBase.setup()/teardown().
Adds a comprehensive test suite covering command behavior and lifecycle scenarios.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds the `integration` Typer sub-app and core command implementations/helpers.
`tests/integrations/test_integration_subcommand.py`	New tests validating all integration subcommands and lifecycle behaviors.

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Comments suppressed due to low confidence (1)

src/specify_cli/init.py:1856

In the switch uninstall phase, if the current integration can’t be resolved (current_integration is None) but a manifest exists, the code skips teardown entirely, leaving the old integration files in place and potentially conflicting with the target integration. Consider falling back to IntegrationManifest.load(...).uninstall(...) when current_integration is missing, rather than skipping uninstall.

        current_integration = get_integration(installed_key)
        manifest_path = project_root / ".specify" / "integrations" / f"{installed_key}.manifest.json"

        if current_integration and manifest_path.exists():
            console.print(f"Uninstalling current integration: [cyan]{installed_key}[/cyan]")
            old_manifest = IntegrationManifest.load(installed_key, project_root)
            removed, skipped = current_integration.teardown(
                project_root, old_manifest, force=force,
            )
            if removed:
                console.print(f"  Removed {len(removed)} file(s)")
            if skipped:
                console.print(f"  [yellow]⚠[/yellow]  {len(skipped)} modified file(s) preserved")
        else:
            console.print(f"[dim]No manifest for '{installed_key}' — skipping uninstall phase[/dim]")

Files reviewed: 2/2 changed files
Comments generated: 4

src/specify_cli/__init__.py

…ll/switch - Remove --force parameter entirely from integration install; users must uninstall before reinstalling to prevent orphaned files - Auto-install shared infrastructure (.specify/scripts/, .specify/templates/) when missing during install or switch - Add test for shared infra creation on bare project install

src/specify_cli/__init__.py

The == key case already returns above, so the != key guard is always true at this point. Simplify to just 'if installed_key:'.

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI agent integrations after project initialization, enabling listing, install, uninstall (hash-safe), and switching integrations in existing spec-kit projects.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands and supporting helpers for reading/writing integration metadata and init-options updates.
Implements integration option passthrough via --integration-options parsing and script type resolution via CLI → init-options → platform default.
Adds a comprehensive test suite covering command validation, lifecycle behavior, safe uninstall preservation, and switching semantics.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds `integration` Typer sub-app with list/install/uninstall/switch logic and shared helpers.
`tests/integrations/test_integration_subcommand.py`	Adds end-to-end CLI tests for the new integration subcommands and edge cases.

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Comments suppressed due to low confidence (1)

src/specify_cli/init.py:1870

Same issue as integration install: shared infra setup is conditioned only on .specify/scripts existing. Switching into a project where scripts exist but templates are missing will skip _install_shared_infra() and can break integrations that expect .specify/templates to be present. Recommend checking for both directories (and/or calling _install_shared_infra() unconditionally).

    # Ensure shared infrastructure exists
    if not (project_root / ".specify" / "scripts").exists():
        _install_shared_infra(project_root, selected_script)
        if os.name != "nt":
            ensure_executable_scripts(project_root)

Files reviewed: 2/2 changed files
Comments generated: 2

src/specify_cli/__init__.py

- Call _install_shared_infra() unconditionally on install and switch since it merges without overwriting existing files - Remove premature metadata cleanup between switch phases; metadata is now only updated after successful Phase 2 install

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI agent integrations after project initialization (list/install/uninstall/switch), reusing the existing integration manifest + setup/teardown mechanisms.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands with shared helpers for metadata, script-type resolution, and init-options updates.
Implements --integration-options parsing to pass integration-specific flags through to integrations that declare options.
Adds a comprehensive test suite covering command behavior and lifecycle scenarios (including preserving modified files and shared infrastructure).

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds the `integration` command group and supporting helpers for install/uninstall/switch flows and metadata management.
`tests/integrations/test_integration_subcommand.py`	Adds end-to-end CLI tests for the new integration subcommands and key edge cases.

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Files reviewed: 2/2 changed files
Comments generated: 2

src/specify_cli/__init__.py

…ifest - Wrap IntegrationManifest.load() in switch with ValueError/FileNotFoundError handling, matching the pattern used in uninstall - Split else branch to report 'unknown integration' vs 'no manifest' separately

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI integrations after project initialization (list/install/uninstall/switch), reusing existing integration setup/teardown + manifest tracking.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands with script-type resolution and init-options updates.
Adds parsing for --integration-options passthrough to integrations that declare custom options.
Adds a comprehensive test suite covering install/uninstall/switch lifecycle behaviors and edge cases.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Implements the new `integration` command group, integration metadata helpers, option parsing, and init-options synchronization.
`tests/integrations/test_integration_subcommand.py`	Adds integration subcommand tests covering validation, lifecycle flows, and metadata/shared-infra preservation.

Copilot's findings

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Comments suppressed due to low confidence (1)

src/specify_cli/init.py:1804

Same init-options cleanup issue as above: this only clears keys when opts.get("integration") == key. To avoid leaving stale ai/ai_skills behind, consider clearing when opts.get("integration") == key OR opts.get("ai") == key.

    # Update init-options.json to clear the integration
    opts = load_init_options(project_root)
    if opts.get("integration") == key:
        opts.pop("integration", None)
        opts.pop("ai", None)
        opts.pop("ai_skills", None)
        save_init_options(project_root, opts)

Files reviewed: 2/2 changed files
Comments generated: 4

src/specify_cli/__init__.py

- Remove integration.json in install/switch rollback paths so failed installs don't leave stale metadata - Match on both 'integration' and 'ai' keys when clearing init-options.json during uninstall to handle partially-written metadata

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage integrations after project initialization, enabling listing, installing, uninstalling (hash-safe), and switching integrations for existing spec-kit projects.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands and supporting helpers (script resolution, integration.json read/write, init-options updates, option parsing).
Reuses existing IntegrationManifest + integration setup()/teardown() for safe lifecycle operations and shared infra installation.
Adds a comprehensive new test suite covering command validation and end-to-end lifecycle behaviors.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds `integration` Typer subcommands and helpers for metadata, script type resolution, init-options updates, and integration option parsing.
`tests/integrations/test_integration_subcommand.py`	New tests covering list/install/uninstall/switch flows, including modified-file preservation and script type validation.

Copilot's findings

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Files reviewed: 2/2 changed files
Comments generated: 2

src/specify_cli/__init__.py

- Recovery instructions now guide users through delete manifest → uninstall → reinstall workflow that actually works - Type annotations for optional CLI parameters changed from str to str | None

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI agent integrations after project initialization, aligning integration management with existing specify <noun> <verb> CLI patterns.

Changes:

Introduces specify integration list|install|uninstall|switch commands that reuse the existing IntegrationManifest + IntegrationBase.setup()/teardown() mechanisms.
Adds helpers for script-type resolution, integration metadata (.specify/integration.json) read/write, init-options updates, and --integration-options parsing.
Adds a comprehensive new test suite covering happy paths, validation/errors, lifecycle behaviors, and edge cases.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds the `integration` Typer sub-app plus implementations for list/install/uninstall/switch and supporting helpers.
`tests/integrations/test_integration_subcommand.py`	New tests covering all integration subcommands, lifecycle behavior, and parsing/validation edge cases.

Copilot's findings

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Files reviewed: 2/2 changed files
Comments generated: 2

src/specify_cli/__init__.py

- Uninstall no longer requires the integration to be in the registry; falls back to manifest.uninstall() directly when get_integration() returns None - Switch Phase 1 similarly uses manifest-only uninstall for unknown integrations instead of skipping teardown, preventing orphaned files

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI agent integrations after project initialization, enabling listing, installation, uninstallation, and switching of integrations in existing spec-kit projects.

Changes:

Introduces specify integration list|install|uninstall|switch commands and supporting helpers (script-type resolution, integration.json read/write, init-options updates, integration-options parsing).
Implements integration lifecycle behavior using existing IntegrationManifest hash tracking and IntegrationBase.setup()/teardown() patterns.
Adds a comprehensive test suite covering command behavior, lifecycle flows, and edge cases.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds the `integration` Typer sub-app, helper utilities, and command implementations for list/install/uninstall/switch.
`tests/integrations/test_integration_subcommand.py`	Adds 21 CLI tests covering all new integration subcommands and key edge cases.

Copilot's findings

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Files reviewed: 2/2 changed files
Comments generated: 3

src/specify_cli/__init__.py

- _read_integration_json() now exits with an actionable error when integration.json exists but is corrupt/unreadable - _parse_integration_options() rejects unknown options, validates flag usage, and requires values for non-flag options

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI integrations in already-initialized spec-kit projects (list/install/uninstall/switch), reusing existing integration setup/teardown + manifest tracking.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands and supporting helpers for integration metadata, script-type resolution, and init-options updates.
Adds parsing for --integration-options passthrough to integrations that declare custom options.
Adds a comprehensive test suite covering command behaviors and lifecycle scenarios.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Implements the new `integration` Typer subcommands plus helpers for metadata, script resolution, options parsing, and init-options updates.
`tests/integrations/test_integration_subcommand.py`	New end-to-end CLI tests for integration list/install/uninstall/switch, including lifecycle and edge cases.

Copilot's findings

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Files reviewed: 2/2 changed files
Comments generated: 2

src/specify_cli/__init__.py

… switch - _read_integration_json() validates parsed JSON is a dict, not a list/string - Switch fails fast with recovery guidance when manifest is missing instead of silently skipping teardown and risking co-existing integration files

Copilot

Pull request overview

Adds a new specify integration subcommand group to manage AI integrations after project initialization, enabling listing, installing, uninstalling, and switching integrations within existing spec-kit projects.

Changes:

Introduces specify integration {list,install,uninstall,switch} commands and supporting helpers (integration.json handling, script-type resolution, init-options updates, integration-options parsing).
Implements safe uninstall/switch workflows using IntegrationManifest (hash-based preservation of modified files) and shared-infra reuse.
Adds a comprehensive test suite covering command behaviors and lifecycle scenarios.

Show a summary per file

File	Description
`src/specify_cli/__init__.py`	Adds the `integration` command group plus helpers for metadata, script type resolution, and option parsing.
`tests/integrations/test_integration_subcommand.py`	Adds end-to-end CLI tests for list/install/uninstall/switch, including edge cases and lifecycle preservation behavior.

Copilot's findings

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Files reviewed: 2/2 changed files
Comments generated: 0 new

Initial plan

f81490c

Copilot AI assigned Copilot and mnriem Apr 3, 2026

Copilot started work on behalf of mnriem April 3, 2026 19:29 View session

Copilot AI linked an issue Apr 3, 2026 that may be closed by this pull request

Add specify integration subcommand for post-init integration management #2065

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Potential fix for pull request finding 'Unused import'

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Copilot AI changed the title ~~[WIP] Add specify integration subcommand for post-init integration management~~ Add specify integration subcommand for post-init integration management Apr 3, 2026

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Remove redundant installed_key != key check

42f3c5f

The == key case already returns above, so the != key guard is always true at this point. Simplify to just 'if installed_key:'.

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Log rollback failures instead of silently suppressing them

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Fix recovery guidance for unreadable manifests, fix type annotations

3fdfa00

- Recovery instructions now guide users through delete manifest → uninstall → reinstall workflow that actually works - Type annotations for optional CLI parameters changed from str to str | None

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mnriem merged commit 94ba857 into main Apr 3, 2026
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mnriem deleted the copilot/add-specify-integration-subcommand branch April 3, 2026 22:35

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Copilot AI commented Apr 3, 2026 •

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