Add cBioPortal page

[anngvu]

See preview here 👉🏼 https://docs-git-feat-cbioportal-page-gf-dcc-service.vercel.app/docs/workflows/cBioPortal

@cconrad8 -- You can make any changes before adding Ino and Ritika to review. I prompted ChatGPT to simplify and create the rough diagram from original version, so there things to double-check. Restyling colors fine.

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Name	Status	Preview	Comments	Updated (UTC)
docs	✅ Ready (Inspect)	Visit Preview	💬 Add feedback	May 2, 2024 7:55pm

[cconrad8]

looks great! I changed the colors and made some text edits. otherwise I think good to me!

[ritikakundra]

Looks good to me. Quick question, for, " Is direct data contribution to cBioPortal feasible by the contributor?- Yes", not sure why we need "CONTRIBUTOR: Works directly with MSKCC on the submission process of data to cBioPortal".

Maybe not for the workflow, but we should figure out how you will hand over the files to us. For Drapkin cohort, if I remember correctly, it was via synapse. Should we continue with that process? Datahub will not be an option as data is not public till phase 3

[cconrad8]

Looks good to me. Quick question, for, " Is direct data contribution to cBioPortal feasible by the contributor?- Yes", not sure why we need "CONTRIBUTOR: Works directly with MSKCC on the submission process of data to cBioPortal".

@anngvu @ritikakundra

I think we are trying to say - "is the contributor savy enough to work on preparing the necessary files for cbioportal or does Sage need to step in to do this ? Correct?

Perhaps rephrasing is needed:

"Does the contributor have the expertise and resources to independently manage and prepare data submissions for cBioPortal, or is intervention from Sage required to facilitate this process?

[cconrad8]

Following our discussion today: We want to better streamline this process and let's try to simplify the workflow so it doesn't have as many exchanges between the contributor, MSK, and Sage.

• Sage will prepare the files to be submitted and discuss internally on how we can use existing DCC (Genie and HTAN) protocols to prep files

[anngvu]

@ritikakundra @inodb @cconrad8

I simplified this a bit so MSKCC does even less (no path to work directly with contribs). Merging this version, make a PR or issue if we need to revisit later.