Polish (#70)

* Add files via upload * Delete docusaurus-site-main.zip * add docusaurus website * docusaurus site * change website link * install next * color change and checklist fix * Remove unnecessary workflow * Remove unnecessary workflows/jekyll-gh-pages.yml * add diagram and mission * mermaid update, mission statement, diagram * update yarn * nvm update * updated images, update slack link * yarn update * Fix link only --------- Co-authored-by: Anh Nguyet Vu <[email protected]> Co-authored-by: Anh Nguyet Vu <[email protected]>
gf-dcc · Nov 20, 2023 · aa793ef · aa793ef · vercel · Nov 20, 2023
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diff --git a/docs/data annotation support/_category_.json b/docs/data annotation support/_category_.json
@@ -1,6 +1,6 @@
 {
   "label": "Data Annotation Support",
-  "position": 3,
+  "position": 4,
   "collapsible": true,
   "collapsed": true,
   "link": {

diff --git a/docs/faq.md b/docs/faq.md
@@ -1,5 +1,5 @@
 ---
-sidebar_position: 4
+sidebar_position: 5
 ---
 
 # Frequently Asked Questions

diff --git a/docs/onboarding/data-analysis.md b/docs/onboarding/data-analysis.md
@@ -27,6 +27,7 @@ Below, we provide more details on analysis apps and which data types are targete
 
 #### External Viewers
 
-- [cBioPortal](https://docs.cbioportal.org/) for Cancer Genomics was originally developed at Memorial Sloan Kettering Cancer Center (MSK) for sharing genomic data. We provide a custom instance for the Gray Foundation. 
+- [cBioPortal](https://docs.cbioportal.org/) for Cancer Genomics was originally developed at Memorial Sloan Kettering Cancer Center (MSK) for sharing genomic data. We provide a custom instance for the Gray Foundation.
+Sage and MSK teams will assist in the transfer of data to cBioportal. To learn more about the behind the scenes curation process [see here](https://github.com/cBioPortal/datahub/blob/master/docs/curation-process.md).
 
 - [CELLxGENE](https://github.com/chanzuckerberg/cellxgene) ("cell-by-gene") is an interactive data explorer specifically designed for analyzing single-cell datasets. 
diff --git a/docs/onboarding/onboarding-checklist.mdx b/docs/onboarding/onboarding-checklist.mdx
@@ -34,7 +34,7 @@ Here are the suggested responsibilites:
 | Confirm access permissions on the platform           | ✓                      | ✓                      | ✓                        | ✓              |
 | Review documentation                                 | ✓                      | ✓                      | ✓                          | ✓                 |
 | Receive additional clinical data training              | ✓                      |                       |  ✓                        |                |
-| Attend Portal Design Working Group                   | ✓                      | ✓                      | ✓                        | ✓              |
+| [Attend Working Group Meetings](/docs/category/working-groups)                  | ✓                      | ✓                      | ✓                        | ✓              |
 | Attend Gray Foundation Quarterly Updates              | ✓                      | ✓                      | ✓                        | ✓              |
 | Attend monthly meetings with DCC                      |                      | ✓                      | ✓                        | ✓              |
 | Designate data lead contacts                         | ✓                      |                        |                          |                |

diff --git a/docs/working group meetings/_category_.json b/docs/working group meetings/_category_.json
@@ -0,0 +1,9 @@
+{
+  "label": "Working Groups",
+  "position": 4,
+  "collapsible": true,
+  "collapsed": true,
+  "link": {
+    "type": "generated-index"
+  }
+}
diff --git a/docs/working group meetings/clinical-data-standards.mdx b/docs/working group meetings/clinical-data-standards.mdx
@@ -0,0 +1,13 @@
+import Tabs from '@theme/Tabs';
+import TabItem from '@theme/TabItem';
+
+# Portal Design Working Group
+
+The focus of the Portal Design Working Group is to collaboratively brainstorm strategies for enhancing data discoverability, accessibility, interoperability, and reusability. Within this working group, our objectives include improving our existing portal and sharing valuable insights on how data can be effectively repurposed. This may include demonstrating methods for seamlessly transferring data to external analysis tools.
+All persons affiliated the Gray Foundation atlas are encouraged to attend. 
+
+#### Meeting Notes:
+
+- [Nov 2, 2023 Summary](https://docs.google.com/document/d/1KpUYz-yOqJ3Zrr6ZZSvg_HXsIL3oeV3_VwNeUUkzN78/edit#heading=h.wdrdbgqvrne)
+- Dec 7, 2023 Summary
+- Jan 4, 2024 Summary
diff --git a/docusaurus.config.js b/docusaurus.config.js
@@ -73,6 +73,11 @@ const config = {
             label: 'Help',
           },
           { to: '/blog', label: 'Blog', position: 'left' },
+          {
+            href: 'https://join.slack.com/t/gfbrcaprecanceratlas/shared_invite/zt-254dbv304-F8ZjGMoFsHISGS1ouyp_Iw',
+            label: 'Join Slack Channel',
+            position: 'right',
+          },
           {
             href: 'https://github.com/gf-dcc',
             label: 'GitHub',

diff --git a/src/components/HomepageFeatures/index.js b/src/components/HomepageFeatures/index.js
@@ -5,7 +5,7 @@ import styles from './styles.module.css';
 const FeatureList = [
   {
     title: 'Motivation',
-    Svg: require('@site/static/img/undraw_docusaurus_mountain.svg').default,
+    Svg: require('@site/static/img/launch.svg').default,
     description: (
       <>
         The Gray Foundation is focused on accelerating cancer research to study BRCA-associated precancer and early cancerous lesions in order to develop new prevention, early detection, and interception approaches.
@@ -15,16 +15,16 @@ const FeatureList = [
   },
   {
     title: 'Collaboration',
-    Svg: require('@site/static/img/undraw_docusaurus_tree.svg').default,
+    Svg: require('@site/static/img/group.svg').default,
     description: (
       <>
         In BRCA-associated cancer, no one team can provide the entirety of the big picture. Teams are encouraged to share data and work together.
       </>
-    ),
+        ),
   },
   {
     title: 'Data Coordination',
-    Svg: require('@site/static/img/undraw_docusaurus_react.svg').default,
+    Svg: require('@site/static/img/data.svg').default,
     description: (
       <>
         The Gray Foundation Data Coordinating Center (GF-DCC) provide these documents to help researchers interact with the portal, data, metadata, and other resources.
@@ -41,7 +41,7 @@ function Feature({Svg, title, description}) {
         <Svg className={styles.featureSvg} role="img" />
       </div>
       <div className="text--center padding-horiz--md">
-        <h3>{title}</h3>
+        <h2>{title}</h2>
         <p>{description}</p>
       </div>
     </div>

diff --git a/src/components/HomepageFeatures/styles.module.css b/src/components/HomepageFeatures/styles.module.css
@@ -1,11 +1,12 @@
 .features {
   display: flex;
   align-items: center;
-  padding: 2rem 0;
+  padding: 5rem 0;
   width: 100%;
 }
 
 .featureSvg {
   height: 200px;
-  width: 200px;
+  width: auto;
 }
+