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how to get allele frequencies with Pindel?

Status: Open.

#117 In genome/pindel;

· myourshaw opened on Dec 20, 2019

pindel fails with error while loading shared libraries: libhts.so.3

Status: Open.

#116 In genome/pindel;

· myourshaw opened on Dec 19, 2019

Installing Pindel keeps failing because of htslib

Status: Open.

#115 In genome/pindel;

· claudiadast opened on Dec 2, 2019

NTLEN definition in pindel2vcf4tcga output

Status: Open.

#114 In genome/pindel;

· abolia opened on Nov 13, 2019

Clarification on running pindel on individual samples

Status: Open.

#113 In genome/pindel;

· ashokrags opened on Oct 15, 2019

Large TDs spanning the window size lose supporting reads

Status: Open.

#112 In genome/pindel;

· RobinVanSchendel opened on Oct 2, 2019

Problems in installing pindel

Status: Open.

#111 In genome/pindel;

· thejadeR opened on Aug 29, 2019

CRAM index support

Status: Open.

#110 In genome/pindel;

· neilgoodgame opened on Jul 8, 2019

Duplicate entries in Pindel output

Status: Open.

#109 In genome/pindel;

· stevekm opened on Jul 5, 2019

Where can i find the demo results?

Status: Open.

#108 In genome/pindel;

· CapitanFlint opened on Jul 4, 2019

Long runtime

Status: Open.

#107 In genome/pindel;

· David-Flurin opened on Jul 1, 2019

How does pindel detect large insert

Status: Open.

#105 In genome/pindel;

· liufy11 opened on Apr 22, 2019