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GenePattern

A Platform for Reproducible Bioinformatics

31 followers
San Diego, CA
http://genepattern.org/
@genepattern
@genepattern.org

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genepattern-notebook genepattern-notebook Public

Platform for integrating genomic analysis with Jupyter Notebooks.

Python 44 13
genepattern-server genepattern-server Public

The GenePattern Server web application

HTML 36 18
genepattern-python genepattern-python Public

GenePattern Python Library

Python 11 4

Repositories

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Showing 10 of 253 repositories

spatialGE.STclust Public
SpatialGE STClust module.

genepattern/spatialGE.STclust’s past year of commit activity

R 0 0 0 0 Updated Jun 24, 2025
spatialGE.STplot Public

genepattern/spatialGE.STplot’s past year of commit activity

R 0 0 0 0 Updated Jun 24, 2025
copilot Public
GenePattern Copilot -- Your personal bioinformatics assistant

genepattern/copilot’s past year of commit activity

HTML 0 BSD-3-Clause 0 0 0 Updated Jun 24, 2025
spatialGE.SpatialAutocorrelation Public
SpatialGE STHet and compare_SThet functions

genepattern/spatialGE.SpatialAutocorrelation’s past year of commit activity

R 0 BSD-3-Clause 0 0 0 Updated Jun 24, 2025
spatialGE.STdiff Public
STDiff function

genepattern/spatialGE.STdiff’s past year of commit activity

R 0 0 0 0 Updated Jun 24, 2025
tfsites.GenerateMotifDatabase Public
tfsites modules for defineBindingStites starting with Position Frequency Matrix from JASPAR

genepattern/tfsites.GenerateMotifDatabase’s past year of commit activity

Shell 0 0 0 0 Updated Jun 18, 2025
tfsites.CompareAcrossSeqsFromDNA Public
Compares the two seqs and reports the binding site effect on diff seqs

genepattern/tfsites.CompareAcrossSeqsFromDNA’s past year of commit activity

0 BSD-3-Clause 1 0 0 Updated Jun 17, 2025
tfsites.CompareAcrossSeqsFromGenomicVariants Public Forked from genepattern/tfsites.CompareAcrossSeqsFromDNA
Compares the two seqs and reports the binding site effect on diff seqs

genepattern/tfsites.CompareAcrossSeqsFromGenomicVariants’s past year of commit activity

0 BSD-3-Clause 1 0 0 Updated Jun 17, 2025
genepattern-mcp Public

genepattern/genepattern-mcp’s past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Jun 16, 2025
genepattern-website Public
GenePattern website and associated scripts

genepattern/genepattern-website’s past year of commit activity

HTML 0 0 0 0 Updated Jun 11, 2025

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