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Removing obsolete MetaCyc xrefs as def xrefs. #28523 #29228

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merged 1 commit into from
Nov 14, 2024
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@sjm41 sjm41 commented Nov 14, 2024

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-14/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-14/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

1,4-beta-D-xylan synthase activity http://purl.obolibrary.org/obo/GO_0047517

Removed

Added

13-hydroxydocosanoate 13-beta-glucosyltransferase activity http://purl.obolibrary.org/obo/GO_0047229

Removed

Added

2'-hydroxydaidzein reductase activity http://purl.obolibrary.org/obo/GO_0047525

Removed

Added

2,3-dihydroxybenzoate-serine ligase activity http://purl.obolibrary.org/obo/GO_0047527

Removed

Added

2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one 2-D-glucosyltransferase activity http://purl.obolibrary.org/obo/GO_0047254

Removed

Added

4-acetamidobutyrate deacetylase activity http://purl.obolibrary.org/obo/GO_0047573

Removed

Added

ADP-ribose diphosphatase activity http://purl.obolibrary.org/obo/GO_0047631

Removed

Added

CDP-ribitol ribitolphosphotransferase activity http://purl.obolibrary.org/obo/GO_0047356

Removed

Added

Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate http://purl.obolibrary.org/obo/GO_0061681

Removed

Added

L-threonine catabolic process to D-lactate http://purl.obolibrary.org/obo/GO_0019517

Removed

Added

N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity http://purl.obolibrary.org/obo/GO_0050510

Removed

Added

N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase activity http://purl.obolibrary.org/obo/GO_0047244

Removed

Added

N-acetyllactosaminide 3-alpha-galactosyltransferase activity http://purl.obolibrary.org/obo/GO_0047276

Removed

Added

S-adenosylmethioninamine metabolic process http://purl.obolibrary.org/obo/GO_0046499

Removed

Added

T2-induced deoxynucleotide kinase activity http://purl.obolibrary.org/obo/GO_0050316

Removed

Added

[tyrosine 3-monooxygenase] kinase activity http://purl.obolibrary.org/obo/GO_0050369

Removed

Added

adenosine-phosphate deaminase activity http://purl.obolibrary.org/obo/GO_0047623

Removed

Added

androsterone dehydrogenase (A-specific) activity http://purl.obolibrary.org/obo/GO_0047026

Removed

Added

androsterone dehydrogenase (B-specific) activity http://purl.obolibrary.org/obo/GO_0047042

Removed

Added

butanediol catabolic process http://purl.obolibrary.org/obo/GO_0034078

Removed

Added

caffeate O-methyltransferase activity http://purl.obolibrary.org/obo/GO_0047763

Removed

Added

cyanohydrin beta-glucosyltransferase activity http://purl.obolibrary.org/obo/GO_0047792

Removed

Added

delta1-pyrroline-5-carboxylate synthetase activity http://purl.obolibrary.org/obo/GO_0017084

Removed

Added

formaldehyde dismutase activity http://purl.obolibrary.org/obo/GO_0047895

Removed

Added

glucosaminate ammonia-lyase activity http://purl.obolibrary.org/obo/GO_0047930

Removed

Added

glucose oxidase activity http://purl.obolibrary.org/obo/GO_0046562

Removed

Added

glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity http://purl.obolibrary.org/obo/GO_0047238

Removed

Added

glucuronosyl-disulfoglucosamine glucuronidase activity http://purl.obolibrary.org/obo/GO_0047404

Removed

Added

glutamin-(asparagin-)ase activity http://purl.obolibrary.org/obo/GO_0050417

Removed

Added

hexose oxidase activity http://purl.obolibrary.org/obo/GO_0047979

Removed

Added

inulosucrase activity http://purl.obolibrary.org/obo/GO_0047725

Removed

Added

isoflavone 3'-hydroxylase activity http://purl.obolibrary.org/obo/GO_0048000

Removed

Added

lacto-N-biosidase activity http://purl.obolibrary.org/obo/GO_0047403

Removed

Added

leucocyanidin oxygenase activity http://purl.obolibrary.org/obo/GO_0050589

Removed

Added

phosphoglucomutase (glucose-cofactor) activity http://purl.obolibrary.org/obo/GO_0047468

Removed

Added

poly(ribitol-phosphate) N-acetylglucosaminyltransferase activity http://purl.obolibrary.org/obo/GO_0047269

Removed

Added

raffinose-raffinose alpha-galactotransferase activity http://purl.obolibrary.org/obo/GO_0047234

Removed

Added

sucrose 1F-fructosyltransferase activity http://purl.obolibrary.org/obo/GO_0050306

Removed

Added

sugar-terminal-phosphatase activity http://purl.obolibrary.org/obo/GO_0050309

Removed

Added

tRNA aminoacylation http://purl.obolibrary.org/obo/GO_0043039

Removed

  • tRNA aminoacylation definition "The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules."

Added

  • tRNA aminoacylation definition "The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules."

trihydroxystilbene synthase activity http://purl.obolibrary.org/obo/GO_0050350

Removed

Added

xylono-1,4-lactonase activity http://purl.obolibrary.org/obo/GO_0050402

Removed

Added

@sjm41 sjm41 merged commit 8c62acc into master Nov 14, 2024
6 checks passed
@sjm41 sjm41 deleted the issue-28523sm1 branch November 14, 2024 14:29
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