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pygbif | ||
====== | ||
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|pypi| |docs| |travis| |coverage| | ||
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Python client for the `GBIF API | ||
<http://www.gbif.org/developer/summary>`_ | ||
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`Source on GitHub at sckott/pygbif <https://github.com/sckott/pygbif>`_ | ||
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Other GBIF clients: | ||
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* R: `rgbif`, `ropensci/rgbif <https://github.com/ropensci/rgbif>`_ | ||
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Installation | ||
============ | ||
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Stable from pypi | ||
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.. code-block:: console | ||
pip install pygbif | ||
Development version | ||
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.. code-block:: console | ||
[sudo] pip install git+git://github.com/sckott/pygbif.git#egg=pygbif | ||
`pygbif` is split up into modules for each of the major groups of API methods. | ||
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* Registry - Datasets, Nodes, Installations, Networks, Organizations | ||
* Species - Taxonomic names | ||
* Occurrences - Occurrence data, including the download API | ||
* Maps - Maps, get raster maps from GBIF as png or mvt | ||
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You can import the entire library, or each module individually as needed. | ||
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In addition there is a utils module, currently with one method: `wkt_rewind` | ||
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Registry module | ||
=============== | ||
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registry module API: | ||
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* `organizations` | ||
* `nodes` | ||
* `networks` | ||
* `installations` | ||
* `datasets` | ||
* `dataset_metrics` | ||
* `dataset_suggest` | ||
* `dataset_search` | ||
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Example usage: | ||
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.. code-block:: python | ||
from pygbif import registry | ||
registry.dataset_metrics(uuid='3f8a1297-3259-4700-91fc-acc4170b27ce') | ||
Species module | ||
============== | ||
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species module API: | ||
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* `name_backbone` | ||
* `name_suggest` | ||
* `name_usage` | ||
* `name_lookup` | ||
* `name_parser` | ||
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Example usage: | ||
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.. code-block:: python | ||
from pygbif import species | ||
species.name_suggest(q='Puma concolor') | ||
Occurrences module | ||
================== | ||
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registry module API: | ||
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* `search` | ||
* `get` | ||
* `get_verbatim` | ||
* `get_fragment` | ||
* `count` | ||
* `count_basisofrecord` | ||
* `count_year` | ||
* `count_datasets` | ||
* `count_countries` | ||
* `count_schema` | ||
* `count_publishingcountries` | ||
* `download` | ||
* `download_meta` | ||
* `download_list` | ||
* `download_get` | ||
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Example usage: | ||
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.. code-block:: python | ||
from pygbif import occurrences as occ | ||
occ.search(taxonKey = 3329049) | ||
occ.get(key = 252408386) | ||
occ.count(isGeoreferenced = True) | ||
occ.download('basisOfRecord = LITERATURE') | ||
occ.download('taxonKey = 3119195') | ||
occ.download('decimalLatitude > 50') | ||
occ.download_list(user = "sckott", limit = 5) | ||
occ.download_meta(key = "0000099-140929101555934") | ||
occ.download_get("0000066-140928181241064") | ||
Maps module | ||
=========== | ||
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maps module API: | ||
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* `map` | ||
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Example usage: | ||
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.. code-block:: python | ||
from pygbif import maps | ||
out = maps.map(taxonKey = 212, year = 1998, bin = "hex", | ||
hexPerTile = 30, style = "classic-noborder.poly") | ||
out.response | ||
out.path | ||
out.img | ||
out.plot() | ||
.. image:: https://github.com/sckott/pygbif/raw/master/gbif_map.png | ||
:width: 25% | ||
:scale: 25% | ||
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utils module | ||
============ | ||
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utils module API: | ||
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* `wkt_rewind` | ||
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Example usage: | ||
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.. code-block:: python | ||
from pygbif import utils | ||
x = 'POLYGON((144.6 13.2, 144.6 13.6, 144.9 13.6, 144.9 13.2, 144.6 13.2))' | ||
utils.wkt_rewind(x) | ||
Contributors | ||
============ | ||
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* `Scott Chamberlain <https://github.com/sckott>`_ | ||
* `Robert Forkel <https://github.com/xrotwang>`_ | ||
* `Jan Legind <https://github.com/jlegind>`_ | ||
* `Stijn Van Hoey <https://github.com/stijnvanhoey>`_ | ||
* `Peter Desmet <https://github.com/peterdesmet>`_ | ||
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Meta | ||
==== | ||
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* License: MIT, see `LICENSE file <LICENSE>`_ | ||
* Please note that this project is released with a `Contributor Code of Conduct <CONDUCT.md>`_. By participating in this project you agree to abide by its terms. | ||
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.. |pypi| image:: https://img.shields.io/pypi/v/pygbif.svg | ||
:target: https://pypi.python.org/pypi/pygbif | ||
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.. |docs| image:: https://readthedocs.org/projects/pygbif/badge/?version=latest | ||
:target: http://pygbif.rtfd.org/ | ||
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.. |travis| image:: https://travis-ci.org/sckott/pygbif.svg | ||
:target: https://travis-ci.org/sckott/pygbif | ||
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.. |coverage| image:: https://coveralls.io/repos/sckott/pygbif/badge.svg?branch=master&service=github | ||
:target: https://coveralls.io/github/sckott/pygbif?branch=master |
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