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gallantlab · Apr 13, 2022 · e57ecd8 · e57ecd8
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 9cad32f555da1c40107965e6987fd25e
+config: 13b17c5c373045c1725623acad9b96b1
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb b/_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb
@@ -125,7 +125,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
     }
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diff --git a/_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb b/_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
     }
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   "nbformat": 4,

diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb b/_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
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       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb b/_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/123c014fb1951d73e7b1f19570a43c66/plot_get_roi_vertices.ipynb b/_downloads/123c014fb1951d73e7b1f19570a43c66/plot_get_roi_vertices.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/1bc319bfa2fe17d7880c31c36c39b670/plot_thickness_nanmean.ipynb b/_downloads/1bc319bfa2fe17d7880c31c36c39b670/plot_thickness_nanmean.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
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       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb b/_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
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       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb b/_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
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       "pygments_lexer": "ipython3",
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diff --git a/_downloads/387ca9e74b721456c024802f5fb1210c/plot_subsurfaces.ipynb b/_downloads/387ca9e74b721456c024802f5fb1210c/plot_subsurfaces.ipynb
@@ -143,7 +143,7 @@
       "name": "python",
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       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb b/_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb b/_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb b/_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb b/_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/52e9abd80b9e9d8a38724eb135ea1ab6/multi_panels_plots.ipynb b/_downloads/52e9abd80b9e9d8a38724eb135ea1ab6/multi_panels_plots.ipynb
@@ -118,7 +118,7 @@
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       "pygments_lexer": "ipython3",
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diff --git a/_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb b/_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/5bd5d1eeadaf8c455dfa68ed54b8beaf/plot_make_figure.ipynb b/_downloads/5bd5d1eeadaf8c455dfa68ed54b8beaf/plot_make_figure.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
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diff --git a/_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb b/_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb
@@ -118,7 +118,7 @@
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       "pygments_lexer": "ipython3",
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+      "version": "3.9.12"
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diff --git a/_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb b/_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/5f330fb3660509634926cd0332d7cbc6/plot_vertex.ipynb b/_downloads/5f330fb3660509634926cd0332d7cbc6/plot_vertex.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb b/_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb b/_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb b/_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/6d9612f71399b48fcdf9be6a5d6c4b7f/import_fmriprep.py b/_downloads/6d9612f71399b48fcdf9be6a5d6c4b7f/import_fmriprep.py
@@ -23,7 +23,7 @@
 # import subject into pycortex database
 fmriprep.import_subj(subject_id, source_directory)
 
-# We can use visualize the imported subject's T1-weighted image
+# We can visualize the imported subject's T1-weighted image
 anat_nifti = 'fmriprep/sub-001/anat/sub-001_T1w_preproc.nii.gz'
 t1_image_path = op.join(source_directory, anat_nifti)
 

diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb b/_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb b/_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb b/_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb
@@ -46,7 +46,7 @@
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       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/813e10fd805fb08e209798753ce45729/plot_volume_to_vertex.ipynb b/_downloads/813e10fd805fb08e209798753ce45729/plot_volume_to_vertex.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb b/_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb b/_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb b/_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
     }
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diff --git a/_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb b/_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/967bde64d496491cb07a443c9ede7fc9/plot_advanced_compositing.ipynb b/_downloads/967bde64d496491cb07a443c9ede7fc9/plot_advanced_compositing.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
     }
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diff --git a/_downloads/a075cfaa8cd8b107253dda362b33178e/plot_flatmap_distortion.ipynb b/_downloads/a075cfaa8cd8b107253dda362b33178e/plot_flatmap_distortion.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
     }
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diff --git a/_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb b/_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb
@@ -26,7 +26,7 @@
       },
       "outputs": [],
       "source": [
-        "import cortex\nfrom cortex import fmriprep\nfrom os import path as op\n\n# Location of the downloaded openfmri dataset\nsource_directory = '/derivatives/ds000164'\n# fmriprep subject name (without \"sub-\")\nsubject_id = '001' \n\n# import subject into pycortex database\nfmriprep.import_subj(subject_id, source_directory)\n\n# We can use visualize the imported subject's T1-weighted image\nanat_nifti = 'fmriprep/sub-001/anat/sub-001_T1w_preproc.nii.gz'\nt1_image_path = op.join(source_directory, anat_nifti)\n\n# Now we can make a volume using the built-in identity transform\nt1w_volume = cortex.Volume(t1_image_path, subject_id, 'identity')\n\n# And show the result.\nds = cortex.Dataset(t1w=t1w_volume)\ncortex.webgl.show(ds)"
+        "import cortex\nfrom cortex import fmriprep\nfrom os import path as op\n\n# Location of the downloaded openfmri dataset\nsource_directory = '/derivatives/ds000164'\n# fmriprep subject name (without \"sub-\")\nsubject_id = '001' \n\n# import subject into pycortex database\nfmriprep.import_subj(subject_id, source_directory)\n\n# We can visualize the imported subject's T1-weighted image\nanat_nifti = 'fmriprep/sub-001/anat/sub-001_T1w_preproc.nii.gz'\nt1_image_path = op.join(source_directory, anat_nifti)\n\n# Now we can make a volume using the built-in identity transform\nt1w_volume = cortex.Volume(t1_image_path, subject_id, 'identity')\n\n# And show the result.\nds = cortex.Dataset(t1w=t1w_volume)\ncortex.webgl.show(ds)"
       ]
     }
   ],
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/c47834bb21df7cc049ba6afc8a9f9184/plot_dataset_arithmetic.ipynb b/_downloads/c47834bb21df7cc049ba6afc8a9f9184/plot_dataset_arithmetic.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/c4a1569322d832cb845e73fb64382cd3/plot_volume2D.ipynb b/_downloads/c4a1569322d832cb845e73fb64382cd3/plot_volume2D.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
     }
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diff --git a/_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb b/_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb b/_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb b/_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/dafaff1c5c813c5150e44a7314911857/plot_volumeRGB.ipynb b/_downloads/dafaff1c5c813c5150e44a7314911857/plot_volumeRGB.ipynb
@@ -46,7 +46,7 @@
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       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/e01e45ad3d31a19a9f9f8dff3847cf51/plot_zoom_to_roi.ipynb b/_downloads/e01e45ad3d31a19a9f9f8dff3847cf51/plot_zoom_to_roi.ipynb
@@ -46,7 +46,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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diff --git a/_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb b/_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb
@@ -46,7 +46,7 @@
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       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.10"
+      "version": "3.9.12"
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