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mzToSQLite biotools #752

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merged 4 commits into from
Mar 12, 2024
Merged

mzToSQLite biotools #752

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788c1f0
Add bio.tools for mz_to_sqlite
bebatut Mar 11, 2024
b3ee0df
Fix homepage_url
bebatut Mar 11, 2024
1bad50a
Merge branch 'master' into mz_to_sqlite-biotools
bgruening Mar 12, 2024
061efc2
Add citation
bebatut Mar 12, 2024
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1 change: 1 addition & 0 deletions tools/mz_to_sqlite/.shed.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,3 +7,4 @@ long_description: |
Extract proteomics files: mzIdentML, mzML, MGF, fasta, uniprot_xml into a SQLite DB
remote_repository_url: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite
type: unrestricted
homepage_url: https://github.com/galaxyproteomics/mzToSQLite
17 changes: 16 additions & 1 deletion tools/mz_to_sqlite/mz_to_sqlite.xml
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@@ -1,5 +1,8 @@
<tool id="mz_to_sqlite" name="mz to sqlite" version="2.1.1+galaxy0">
<description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description>
<xrefs>
<xref type="bio.tools">mztosqlite</xref>
</xrefs>
<requirements>
<requirement type="package" version="2.1.1">mztosqlite</requirement>
</requirements>
Expand Down Expand Up @@ -49,5 +52,17 @@ mz_to_sqlite

]]>
</help>
<citations></citations>
<citations>
<citation type="bibtex">
@misc{
mzToSQLite,
author = {GalaxyP},
year = {2021},
title = {mzToSQLite},
publisher = {GitHub},
journal = {GitHub repository},
url = {https://github.com/galaxyproteomics/mzToSQLite},
}
</citation>
</citations>
</tool>