fix tests

galaxyproteomics · Jul 18, 2023 · ab42080 · ab42080
1 parent 9e5e4f8
commit ab42080
Show file tree

Hide file tree

Showing 2 changed files with 2,779 additions and 2 deletions.
diff --git a/tools/msconvert/msconvert_macros.xml b/tools/msconvert/msconvert_macros.xml
@@ -571,6 +571,7 @@
 
 
   <xml name="msconvert_tests">
+    <!-- 1 -->
     <test expect_num_outputs="1">
       <param name="input" value="small.mzML" ftype="mzml" />
       <param name="license_agreement" value="true" />
@@ -603,6 +604,7 @@
       <param name="output_type" value="mzML" />
       <output name="output" file="MassLynxTest.mzML" ftype="mzml" lines_diff="4" />
     </test>
+    <!-- 5 -->
     <test expect_num_outputs="1">
       <param name="input" value="AgilentMassHunterTest.d.tar" ftype="agilentmasshunter.d.tar" />
       <param name="license_agreement" value="true" />
@@ -648,6 +650,7 @@
       <param name="srmAsSpectra" value="true" />
       <output name="output" file="SciexTest-HPINalone-NE-srmAsSpectra.mzXML" ftype="mzxml" lines_diff="4" />
     </test>
+    <!-- 10 -->
     <test expect_num_outputs="1">
       <param name="input" value="SciexTest.wiff.tar" ftype="wiff.tar" />
       <param name="license_agreement" value="true" />
@@ -671,15 +674,15 @@
       </output_collection>
     </test>
 
-    <!-- this data file only has profile MS1, so the result is the same -->
+    <!-- this data file only has profile MS1, so the result is the same (but the file is still quite different because the offsets of the index change) -->
     <test expect_num_outputs="1">
       <param name="input" value="small.mzML" ftype="mzml" />
       <param name="license_agreement" value="true" />
       <param name="output_type" value="mzML" />
       <param name="pick_peaks" value="true" />
       <param name="pick_peaks_algorithm" value="cwt" />
       <param name="pick_peaks_ms_levels" value="1" />
-      <output name="output" file="small-peakpicking-cwt-allMS.mzML" ftype="mzml" lines_diff="8" />
+      <output name="output" file="small-peakpicking-cwt-MS1.mzML" ftype="mzml" lines_diff="8" />
     </test>
     <test expect_num_outputs="1">
       <param name="input" value="small-peakpicking-cwt-allMS.mzML" ftype="mzml" />