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Adds option to run FragPipe job with higher memory.
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reid-wagner committed Jul 24, 2024
1 parent 918ae25 commit a886fbb
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3 changes: 3 additions & 0 deletions tools/fragpipe/fragpipe.xml
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Expand Up @@ -71,6 +71,9 @@
<!-- Only generate a workflow, don't run FragPipe -->
<param name="workflow_only" type="boolean" truevalue="yes" falsevalue="no" checked="false" label="Only generate the workflow output"/>

<!-- Galaxy admins may utilize this variable to for jobs requiring higher memory -->
<param name="high_memory" type="boolean" checked="false" label="High memory job" help="This option is made available for Galaxy administrators to allocate more resources to FragPipe when selected. It may not be used by all systems - please contact your adminstrator to learn if your Galaxy instance does."/>

<param name="output_options" label="Additional outputs" type="select" multiple="true" display="checkboxes" optional="true">
<option value="workflow">FragPipe Workflow</option>
<option value="log">FragPipe Log</option>
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2 changes: 1 addition & 1 deletion tools/fragpipe/macros.xml
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@@ -1,7 +1,7 @@
<macros>
<import>msfragger_macros.xml</import>
<token name="@TOOL_VERSION@">20.0</token>
<token name="@VERSION_SUFFIX@">2</token>
<token name="@VERSION_SUFFIX@">3</token>
<xml name="requirements">
<requirements>
<requirement type="package" version="@TOOL_VERSION@">fragpipe</requirement>
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