Add /usr/local/lib to LD_LIBRARY_PATH for biocontainer environments.

galaxyproteomics · Jun 14, 2024 · 1c7d2a6 · 1c7d2a6
1 parent f95b7f7
commit 1c7d2a6
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/tools/fragpipe/fragpipe.xml b/tools/fragpipe/fragpipe.xml
@@ -27,6 +27,7 @@
         export XDG_CONFIG_HOME=\$(pwd)/.config &&
         export XDG_CACHE_HOME=\$(pwd)/.cache &&
         export JAVA_OPTS="\$JAVA_OPTS -Xmx\$[ \${GALAXY_MEMORY_MB:-8192} / 1024 ]g -Djava.io.tmpdir=\$(pwd)/tmp" &&
+        export LD_LIBRARY_PATH="\$LD_LIBRARY_PATH:/usr/local/lib" &&
         mkdir -p outputs &&
         @CMD_IMPORTS@
         @LINK_FRAGGER_DATABASE@