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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 173 57

  2. scooby scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 69 9

  3. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 58 13

  4. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 58 26

  5. absplice absplice Public

    Python 42 4

  6. AbExp AbExp Public

    Aberrant gene expression prediction across human tissues based on DNA sequence variants

    Python 9 1

Repositories

Showing 10 of 63 repositories
  • AbExp Public

    Aberrant gene expression prediction across human tissues based on DNA sequence variants

    gagneurlab/AbExp's past year of commit activity
    Python 9 MIT 1 0 2 Updated Oct 9, 2026
  • NMD-Scanner Public
    gagneurlab/NMD-Scanner's past year of commit activity
    Jupyter Notebook 3 MIT 1 0 2 Updated Oct 8, 2026
  • PROTRIDER Public
    gagneurlab/PROTRIDER's past year of commit activity
    Python 6 MIT 5 0 0 Updated Oct 7, 2026
  • ukbbgym Public
    gagneurlab/ukbbgym's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 6, 2026
  • kipoiseq2 Public
    gagneurlab/kipoiseq2's past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 4, 2026
  • AbExp-utils Public
    gagneurlab/AbExp-utils's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 29, 2026
  • PepPr Public
    gagneurlab/PepPr's past year of commit activity
    Python 0 0 0 0 Updated Sep 24, 2026
  • gagneurlab/ukbb-utils-gagneur's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 18, 2026
  • absplice2 Public
    gagneurlab/absplice2's past year of commit activity
    Python 2 GPL-3.0 0 1 0 Updated Aug 31, 2026
  • gagneurlab/solve-rd-rna-seq-paper's past year of commit activity
    R 0 0 0 0 Updated Aug 25, 2026