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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 218 112

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 201 47

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 98 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 87 37

  5. task-execution-schemas task-execution-schemas Public

    83 29

  6. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    83 39

Repositories

Showing 10 of 126 repositories
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 5 114 (2 issues need help) 1 Updated Apr 5, 2025
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 87 Apache-2.0 37 24 (1 issue needs help) 0 Updated Apr 3, 2025
  • cat-vrs-python Public

    GA4GH Categorical Variation Representation Python Implementation

    ga4gh/cat-vrs-python’s past year of commit activity
    Python 1 Apache-2.0 3 1 0 Updated Apr 3, 2025
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    ga4gh/vrs-python’s past year of commit activity
    Python 54 Apache-2.0 31 50 (1 issue needs help) 6 Updated Apr 3, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    ga4gh/va-spec-python’s past year of commit activity
    Python 1 Apache-2.0 2 3 2 Updated Apr 3, 2025
  • connect-2025-hackathon Public

    April Connect 2025 hackathon session

    ga4gh/connect-2025-hackathon’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 2, 2025
  • fasp-scripts Public
    ga4gh/fasp-scripts’s past year of commit activity
    Jupyter Notebook 12 Apache-2.0 6 9 0 Updated Apr 2, 2025
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 3 Apache-2.0 3 16 (3 issues need help) 0 Updated Apr 1, 2025
  • large-scale-genomics-wiki Public

    Homepage for the Large Scale Genomics Work Stream

    ga4gh/large-scale-genomics-wiki’s past year of commit activity
    7 3 1 0 Updated Mar 31, 2025
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    ga4gh/quality-control-wgs’s past year of commit activity
    Jupyter Notebook 14 Apache-2.0 4 10 5 Updated Mar 28, 2025