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Set of steps for heritability analysis Keep the given structure of the raw data for safety of scripts usage. Requires: #Docker (for ubuntu, sudo apt-get install docker) ###################### #Pre-processing tasks# ###################### #Preprocessing branch 1. Remove extra stats table in each sheet from Demographics.xlsx For preprocessing, run: $docker push fesantos/herit $docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript datastruct.R ############ #Processing# ############ #Master branch Test if docker image fesantos/herit is available $docker images | grep "fesantos/herit" If not, download image $docker push fesantos/herit ##Univariate analysis## #Make sure the doc final_table is available at the current directory (uncompressed) and RUN: #Verify if you are at the same dir docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript processing.R ##Multivariate analysis## #Fin data docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript groupfin_null.R docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript wbfin_null.R docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript multiprocessing_bygroup_fin.R docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript multiprocessing_fin.R #Gordon data docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript groupgordon_null.R docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript wbgordon_null.R docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript multiprocessing_bygroup_gordon.R docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript multiprocessing_gordon.R
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