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4 changes: 4 additions & 0 deletions CHANGELOG.md
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# Changelog
The semantic versioning is kind of random.

## 4.1.2
### BugFix
- Fix the neutral background mutations

## 4.1.1
- Split the exp. growing phase into two: 1. in phase `t_N` we have the growth phase, and `Theta*t_N` mutations from the bg 2. in phase `t_birth - t_N`cells stop dividing, and we only have `(t_birth-t_N)*Theta` mutations from the bg.
- update dependencies: rayon, uuid and others
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2 changes: 1 addition & 1 deletion Cargo.lock
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2 changes: 1 addition & 1 deletion Cargo.toml
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[package]
name = "hsc"
version = "4.1.1"
version = "4.1.2"
edition = "2021"

[dependencies]
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2 changes: 1 addition & 1 deletion docs/anstream/adapter/fn.strip_bytes.html
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<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width, initial-scale=1.0"><meta name="generator" content="rustdoc"><meta name="description" content="Strip ANSI escapes from bytes, returning the printable content"><title>strip_bytes in anstream::adapter - Rust</title><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceSerif4-Regular-46f98efaafac5295.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Regular-018c141bf0843ffd.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Medium-8f9a781e4970d388.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Regular-562dcc5011b6de7d.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Semibold-d899c5a5c4aeb14a.ttf.woff2"><link rel="stylesheet" href="../../static.files/normalize-76eba96aa4d2e634.css"><link rel="stylesheet" href="../../static.files/rustdoc-9ee3a5e31a2afa3e.css"><meta name="rustdoc-vars" data-root-path="../../" data-static-root-path="../../static.files/" data-current-crate="anstream" data-themes="" data-resource-suffix="" data-rustdoc-version="1.75.0 (82e1608df 2023-12-21)" data-channel="1.75.0" data-search-js="search-8fbf244ebcf71464.js" data-settings-js="settings-74424d7eec62a23e.js" ><script src="../../static.files/storage-fec3eaa3851e447d.js"></script><script defer src="sidebar-items.js"></script><script defer src="../../static.files/main-9dd44ab47b99a0fb.js"></script><noscript><link rel="stylesheet" href="../../static.files/noscript-5d8b3c7633ad77ba.css"></noscript><link rel="alternate icon" type="image/png" href="../../static.files/favicon-16x16-8b506e7a72182f1c.png"><link rel="alternate icon" type="image/png" href="../../static.files/favicon-32x32-422f7d1d52889060.png"><link rel="icon" type="image/svg+xml" href="../../static.files/favicon-2c020d218678b618.svg"></head><body class="rustdoc fn"><!--[if lte IE 11]><div class="warning">This old browser is unsupported and will most likely display funky things.</div><![endif]--><nav class="mobile-topbar"><button class="sidebar-menu-toggle">&#9776;</button></nav><nav class="sidebar"><div class="sidebar-crate"><h2><a href="../../anstream/index.html">anstream</a><span class="version">0.6.5</span></h2></div><div class="sidebar-elems"><h2><a href="index.html">In anstream::adapter</a></h2></div></nav><main><div class="width-limiter"><nav class="sub"><form class="search-form"><span></span><input class="search-input" name="search" aria-label="Run search in the documentation" autocomplete="off" spellcheck="false" placeholder="Click or press ‘S’ to search, ‘?’ for more options…" type="search"><div id="help-button" title="help" tabindex="-1"><a href="../../help.html">?</a></div><div id="settings-menu" tabindex="-1"><a href="../../settings.html" title="settings"><img width="22" height="22" alt="Change settings" src="../../static.files/wheel-7b819b6101059cd0.svg"></a></div></form></nav><section id="main-content" class="content"><div class="main-heading"><h1>Function <a href="../index.html">anstream</a>::<wbr><a href="index.html">adapter</a>::<wbr><a class="fn" href="#">strip_bytes</a><button id="copy-path" title="Copy item path to clipboard"><img src="../../static.files/clipboard-7571035ce49a181d.svg" width="19" height="18" alt="Copy item path"></button></h1><span class="out-of-band"><a class="src" href="../../src/anstream/adapter/strip.rs.html#189-191">source</a> · <button id="toggle-all-docs" title="collapse all docs">[<span>&#x2212;</span>]</button></span></div><pre class="rust item-decl"><code>pub fn strip_bytes(data: &amp;[<a class="primitive" href="https://doc.rust-lang.org/1.75.0/std/primitive.u8.html">u8</a>]) -&gt; <a class="struct" href="struct.StrippedBytes.html" title="struct anstream::adapter::StrippedBytes">StrippedBytes</a>&lt;'_&gt; <a href="#" class="tooltip" data-notable-ty="StrippedBytes&lt;&#39;_&gt;">ⓘ</a></code></pre><details class="toggle top-doc" open><summary class="hideme"><span>Expand description</span></summary><div class="docblock"><p>Strip ANSI escapes from bytes, returning the printable content</p>
<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width, initial-scale=1.0"><meta name="generator" content="rustdoc"><meta name="description" content="Strip ANSI escapes from bytes, returning the printable content"><title>strip_bytes in anstream::adapter - Rust</title><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceSerif4-Regular-46f98efaafac5295.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Regular-018c141bf0843ffd.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Medium-8f9a781e4970d388.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Regular-562dcc5011b6de7d.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Semibold-d899c5a5c4aeb14a.ttf.woff2"><link rel="stylesheet" href="../../static.files/normalize-76eba96aa4d2e634.css"><link rel="stylesheet" href="../../static.files/rustdoc-9ee3a5e31a2afa3e.css"><meta name="rustdoc-vars" data-root-path="../../" data-static-root-path="../../static.files/" data-current-crate="anstream" data-themes="" data-resource-suffix="" data-rustdoc-version="1.75.0 (82e1608df 2023-12-21)" data-channel="1.75.0" data-search-js="search-8fbf244ebcf71464.js" data-settings-js="settings-74424d7eec62a23e.js" ><script src="../../static.files/storage-fec3eaa3851e447d.js"></script><script defer src="sidebar-items.js"></script><script defer src="../../static.files/main-9dd44ab47b99a0fb.js"></script><noscript><link rel="stylesheet" href="../../static.files/noscript-5d8b3c7633ad77ba.css"></noscript><link rel="alternate icon" type="image/png" href="../../static.files/favicon-16x16-8b506e7a72182f1c.png"><link rel="alternate icon" type="image/png" href="../../static.files/favicon-32x32-422f7d1d52889060.png"><link rel="icon" type="image/svg+xml" href="../../static.files/favicon-2c020d218678b618.svg"></head><body class="rustdoc fn"><!--[if lte IE 11]><div class="warning">This old browser is unsupported and will most likely display funky things.</div><![endif]--><nav class="mobile-topbar"><button class="sidebar-menu-toggle">&#9776;</button></nav><nav class="sidebar"><div class="sidebar-crate"><h2><a href="../../anstream/index.html">anstream</a><span class="version">0.6.13</span></h2></div><div class="sidebar-elems"><h2><a href="index.html">In anstream::adapter</a></h2></div></nav><main><div class="width-limiter"><nav class="sub"><form class="search-form"><span></span><input class="search-input" name="search" aria-label="Run search in the documentation" autocomplete="off" spellcheck="false" placeholder="Click or press ‘S’ to search, ‘?’ for more options…" type="search"><div id="help-button" title="help" tabindex="-1"><a href="../../help.html">?</a></div><div id="settings-menu" tabindex="-1"><a href="../../settings.html" title="settings"><img width="22" height="22" alt="Change settings" src="../../static.files/wheel-7b819b6101059cd0.svg"></a></div></form></nav><section id="main-content" class="content"><div class="main-heading"><h1>Function <a href="../index.html">anstream</a>::<wbr><a href="index.html">adapter</a>::<wbr><a class="fn" href="#">strip_bytes</a><button id="copy-path" title="Copy item path to clipboard"><img src="../../static.files/clipboard-7571035ce49a181d.svg" width="19" height="18" alt="Copy item path"></button></h1><span class="out-of-band"><a class="src" href="../../src/anstream/adapter/strip.rs.html#176-178">source</a> · <button id="toggle-all-docs" title="collapse all docs">[<span>&#x2212;</span>]</button></span></div><pre class="rust item-decl"><code>pub fn strip_bytes(data: &amp;[<a class="primitive" href="https://doc.rust-lang.org/1.75.0/std/primitive.u8.html">u8</a>]) -&gt; <a class="struct" href="struct.StrippedBytes.html" title="struct anstream::adapter::StrippedBytes">StrippedBytes</a>&lt;'_&gt; <a href="#" class="tooltip" data-notable-ty="StrippedBytes&lt;&#39;_&gt;">ⓘ</a></code></pre><details class="toggle top-doc" open><summary class="hideme"><span>Expand description</span></summary><div class="docblock"><p>Strip ANSI escapes from bytes, returning the printable content</p>
<p>This can be used to take output from a program that includes escape sequences and write it
somewhere that does not easily support them, such as a log file.</p>
<h2 id="example"><a href="#example">Example</a></h2>
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2 changes: 1 addition & 1 deletion docs/anstream/adapter/fn.strip_str.html
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<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width, initial-scale=1.0"><meta name="generator" content="rustdoc"><meta name="description" content="Strip ANSI escapes from a `&amp;str`, returning the printable content"><title>strip_str in anstream::adapter - Rust</title><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceSerif4-Regular-46f98efaafac5295.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Regular-018c141bf0843ffd.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Medium-8f9a781e4970d388.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Regular-562dcc5011b6de7d.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Semibold-d899c5a5c4aeb14a.ttf.woff2"><link rel="stylesheet" href="../../static.files/normalize-76eba96aa4d2e634.css"><link rel="stylesheet" href="../../static.files/rustdoc-9ee3a5e31a2afa3e.css"><meta name="rustdoc-vars" data-root-path="../../" data-static-root-path="../../static.files/" data-current-crate="anstream" data-themes="" data-resource-suffix="" data-rustdoc-version="1.75.0 (82e1608df 2023-12-21)" data-channel="1.75.0" data-search-js="search-8fbf244ebcf71464.js" data-settings-js="settings-74424d7eec62a23e.js" ><script src="../../static.files/storage-fec3eaa3851e447d.js"></script><script defer src="sidebar-items.js"></script><script defer src="../../static.files/main-9dd44ab47b99a0fb.js"></script><noscript><link rel="stylesheet" href="../../static.files/noscript-5d8b3c7633ad77ba.css"></noscript><link rel="alternate icon" type="image/png" href="../../static.files/favicon-16x16-8b506e7a72182f1c.png"><link rel="alternate icon" type="image/png" href="../../static.files/favicon-32x32-422f7d1d52889060.png"><link rel="icon" type="image/svg+xml" href="../../static.files/favicon-2c020d218678b618.svg"></head><body class="rustdoc fn"><!--[if lte IE 11]><div class="warning">This old browser is unsupported and will most likely display funky things.</div><![endif]--><nav class="mobile-topbar"><button class="sidebar-menu-toggle">&#9776;</button></nav><nav class="sidebar"><div class="sidebar-crate"><h2><a href="../../anstream/index.html">anstream</a><span class="version">0.6.5</span></h2></div><div class="sidebar-elems"><h2><a href="index.html">In anstream::adapter</a></h2></div></nav><main><div class="width-limiter"><nav class="sub"><form class="search-form"><span></span><input class="search-input" name="search" aria-label="Run search in the documentation" autocomplete="off" spellcheck="false" placeholder="Click or press ‘S’ to search, ‘?’ for more options…" type="search"><div id="help-button" title="help" tabindex="-1"><a href="../../help.html">?</a></div><div id="settings-menu" tabindex="-1"><a href="../../settings.html" title="settings"><img width="22" height="22" alt="Change settings" src="../../static.files/wheel-7b819b6101059cd0.svg"></a></div></form></nav><section id="main-content" class="content"><div class="main-heading"><h1>Function <a href="../index.html">anstream</a>::<wbr><a href="index.html">adapter</a>::<wbr><a class="fn" href="#">strip_str</a><button id="copy-path" title="Copy item path to clipboard"><img src="../../static.files/clipboard-7571035ce49a181d.svg" width="19" height="18" alt="Copy item path"></button></h1><span class="out-of-band"><a class="src" href="../../src/anstream/adapter/strip.rs.html#22-24">source</a> · <button id="toggle-all-docs" title="collapse all docs">[<span>&#x2212;</span>]</button></span></div><pre class="rust item-decl"><code>pub fn strip_str(data: &amp;<a class="primitive" href="https://doc.rust-lang.org/1.75.0/std/primitive.str.html">str</a>) -&gt; <a class="struct" href="struct.StrippedStr.html" title="struct anstream::adapter::StrippedStr">StrippedStr</a>&lt;'_&gt; <a href="#" class="tooltip" data-notable-ty="StrippedStr&lt;&#39;_&gt;">ⓘ</a></code></pre><details class="toggle top-doc" open><summary class="hideme"><span>Expand description</span></summary><div class="docblock"><p>Strip ANSI escapes from a <code>&amp;str</code>, returning the printable content</p>
<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width, initial-scale=1.0"><meta name="generator" content="rustdoc"><meta name="description" content="Strip ANSI escapes from a `&amp;str`, returning the printable content"><title>strip_str in anstream::adapter - Rust</title><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceSerif4-Regular-46f98efaafac5295.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Regular-018c141bf0843ffd.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/FiraSans-Medium-8f9a781e4970d388.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Regular-562dcc5011b6de7d.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../../static.files/SourceCodePro-Semibold-d899c5a5c4aeb14a.ttf.woff2"><link rel="stylesheet" href="../../static.files/normalize-76eba96aa4d2e634.css"><link rel="stylesheet" href="../../static.files/rustdoc-9ee3a5e31a2afa3e.css"><meta name="rustdoc-vars" data-root-path="../../" data-static-root-path="../../static.files/" data-current-crate="anstream" data-themes="" data-resource-suffix="" data-rustdoc-version="1.75.0 (82e1608df 2023-12-21)" data-channel="1.75.0" data-search-js="search-8fbf244ebcf71464.js" data-settings-js="settings-74424d7eec62a23e.js" ><script src="../../static.files/storage-fec3eaa3851e447d.js"></script><script defer src="sidebar-items.js"></script><script defer src="../../static.files/main-9dd44ab47b99a0fb.js"></script><noscript><link rel="stylesheet" href="../../static.files/noscript-5d8b3c7633ad77ba.css"></noscript><link rel="alternate icon" type="image/png" href="../../static.files/favicon-16x16-8b506e7a72182f1c.png"><link rel="alternate icon" type="image/png" href="../../static.files/favicon-32x32-422f7d1d52889060.png"><link rel="icon" type="image/svg+xml" href="../../static.files/favicon-2c020d218678b618.svg"></head><body class="rustdoc fn"><!--[if lte IE 11]><div class="warning">This old browser is unsupported and will most likely display funky things.</div><![endif]--><nav class="mobile-topbar"><button class="sidebar-menu-toggle">&#9776;</button></nav><nav class="sidebar"><div class="sidebar-crate"><h2><a href="../../anstream/index.html">anstream</a><span class="version">0.6.13</span></h2></div><div class="sidebar-elems"><h2><a href="index.html">In anstream::adapter</a></h2></div></nav><main><div class="width-limiter"><nav class="sub"><form class="search-form"><span></span><input class="search-input" name="search" aria-label="Run search in the documentation" autocomplete="off" spellcheck="false" placeholder="Click or press ‘S’ to search, ‘?’ for more options…" type="search"><div id="help-button" title="help" tabindex="-1"><a href="../../help.html">?</a></div><div id="settings-menu" tabindex="-1"><a href="../../settings.html" title="settings"><img width="22" height="22" alt="Change settings" src="../../static.files/wheel-7b819b6101059cd0.svg"></a></div></form></nav><section id="main-content" class="content"><div class="main-heading"><h1>Function <a href="../index.html">anstream</a>::<wbr><a href="index.html">adapter</a>::<wbr><a class="fn" href="#">strip_str</a><button id="copy-path" title="Copy item path to clipboard"><img src="../../static.files/clipboard-7571035ce49a181d.svg" width="19" height="18" alt="Copy item path"></button></h1><span class="out-of-band"><a class="src" href="../../src/anstream/adapter/strip.rs.html#22-24">source</a> · <button id="toggle-all-docs" title="collapse all docs">[<span>&#x2212;</span>]</button></span></div><pre class="rust item-decl"><code>pub fn strip_str(data: &amp;<a class="primitive" href="https://doc.rust-lang.org/1.75.0/std/primitive.str.html">str</a>) -&gt; <a class="struct" href="struct.StrippedStr.html" title="struct anstream::adapter::StrippedStr">StrippedStr</a>&lt;'_&gt; <a href="#" class="tooltip" data-notable-ty="StrippedStr&lt;&#39;_&gt;">ⓘ</a></code></pre><details class="toggle top-doc" open><summary class="hideme"><span>Expand description</span></summary><div class="docblock"><p>Strip ANSI escapes from a <code>&amp;str</code>, returning the printable content</p>
<p>This can be used to take output from a program that includes escape sequences and write it
somewhere that does not easily support them, such as a log file.</p>
<p>For non-contiguous data, see <a href="struct.StripStr.html" title="struct anstream::adapter::StripStr"><code>StripStr</code></a>.</p>
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