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fraterenz committed Apr 4, 2024
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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# Changelog
The semantic versioning is kind of random.

## 4.3.5
- reintroduce the factor 2 for the fit variants to avoid "initiating fit variants at size 2, instead of 1"

## 4.3.4
### BugFix
- first sample fit variant (clone) for the parental cell, then assigned both cells to that sampled clone, this justifies removing the factor 2
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2 changes: 1 addition & 1 deletion Cargo.lock

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2 changes: 1 addition & 1 deletion Cargo.toml
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[package]
name = "hsc"
version = "4.3.4"
version = "4.3.5"
edition = "2021"

[dependencies]
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2 changes: 1 addition & 1 deletion docs/hsc/all.html
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<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width, initial-scale=1.0"><meta name="generator" content="rustdoc"><meta name="description" content="List of all items in this crate"><title>List of all items in this crate</title><link rel="preload" as="font" type="font/woff2" crossorigin href="../static.files/SourceSerif4-Regular-46f98efaafac5295.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../static.files/FiraSans-Regular-018c141bf0843ffd.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../static.files/FiraSans-Medium-8f9a781e4970d388.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../static.files/SourceCodePro-Regular-562dcc5011b6de7d.ttf.woff2"><link rel="preload" as="font" type="font/woff2" crossorigin href="../static.files/SourceCodePro-Semibold-d899c5a5c4aeb14a.ttf.woff2"><link rel="stylesheet" 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