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Unable to successfully install vcf2gwas in new conda environment - numpy dependency version problems

Status: Open.

#45 In frankvogt/vcf2gwas;

· TobyBaril opened on May 23, 2024

· Updated on May 8, 2025

3 comments

Unable to install in new conda environment

Status: Open.

#39 In frankvogt/vcf2gwas;

· jeremysutherland opened on Aug 11, 2023

· Updated on Mar 13, 2025

5 comments

number of analyzed SNPs = 0

Status: Open.

#34 In frankvogt/vcf2gwas;

· MooseyGoosey opened on Jun 14, 2023

· Updated on Feb 25, 2025

1 comment

run error

Status: Open.

#47 In frankvogt/vcf2gwas;

· Xugh1 opened on Jul 5, 2024

· Updated on Jul 5, 2024

vcf2gwas breaking

Status: Open.

#46 In frankvogt/vcf2gwas;

· glaudelrio opened on Jun 20, 2024

· Updated on Jun 20, 2024

PLINK requires Sex Info

Status: Open.

#44 In frankvogt/vcf2gwas;

· maxx694 opened on May 20, 2024

· Updated on May 20, 2024

Variants analysed fewer than the input VCF's SNPs

Status: Open.

#43 In frankvogt/vcf2gwas;

· KarinaGuo opened on Apr 30, 2024

· Updated on Apr 30, 2024

ModuleNotFoundError: No module named 'umap'

Status: Open.

#42 In frankvogt/vcf2gwas;

· biopelayo opened on Apr 17, 2024

· Updated on Apr 17, 2024

ChildProcessError

Status: Open.

#41 In frankvogt/vcf2gwas;

· Lattesnow opened on Mar 13, 2024

· Updated on Mar 13, 2024

1 comment

The process stop

Status: Open.

#40 In frankvogt/vcf2gwas;

· nibrasissa opened on Nov 1, 2023

· Updated on Nov 1, 2023

Can't view Manhattan and QQ-plots

Status: Open.

#36 In frankvogt/vcf2gwas;

· TinaNeik339 opened on Jul 13, 2023

· Updated on Jul 13, 2023

can't update to new version v0.8.9

Status: Open.

#35 In frankvogt/vcf2gwas;

· vinod1981 opened on Jun 26, 2023

· Updated on Jun 26, 2023

Problem installing in fresh conda environment.

Status: Open.

#23 In frankvogt/vcf2gwas;

· Old-Green-Man opened on Mar 17, 2023

· Updated on Jun 14, 2023

4 comments

Info: No SNPs could be compared to genes, please check the species or gene file selection

Status: Open.

#33 In frankvogt/vcf2gwas;

· jeremysutherland opened on Jun 8, 2023

· Updated on Jun 8, 2023

Logistic regression?

Status: Open.

#31 In frankvogt/vcf2gwas;

· Jolleboll opened on Jun 1, 2023

· Updated on Jun 1, 2023

Error: missing 1 required positional argument: 'dir_temp'

Status: Open.

#21 In frankvogt/vcf2gwas;

· adrianodemarino opened on Feb 20, 2023

· Updated on Apr 11, 2023

4 comments

hello, I have recently been trying to use vcf2gwas, but I have encountered the following issues. Can you please advise me on how to solve them?

Status: Open.

#19 In frankvogt/vcf2gwas;

· zxljiqixuexi opened on Feb 15, 2023

· Updated on Feb 27, 2023

3 comments

Output results folders contain blank spaces

Status: Open.

#16 In frankvogt/vcf2gwas;

· vinod1981 opened on Aug 3, 2022

· Updated on Nov 23, 2022

4 comments

Specify covariates file and PCA

Status: Open.

#12 In frankvogt/vcf2gwas;

· llniu opened on Jun 22, 2022

· Updated on Sep 1, 2022

6 comments

error

Status: Open.

#13 In frankvogt/vcf2gwas;

· adriludwig opened on Jul 22, 2022

· Updated on Aug 4, 2022

1 comment