Merge pull request #20 from forlilab/prep-v1.1 #43

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python package

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build:

	runs-on: ${{ matrix.os }}
	defaults:
	run:
	shell: bash -l {0}
	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest, macOS-latest]
	python-version: ["3.9", "3.10", "3.11"]

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	conda activate test
	conda install pip
	pip install flake8
	pip install pytest
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	pip install .
	conda install -c conda-forge chemicalite
	conda install libtiff
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	conda activate test
	cd test
	pytest

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