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retain well info when combining anndata
#11
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name: unit-tests | |
on: | |
push: | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: | |
jobs: | |
test: | |
name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.platform }} | |
strategy: | |
matrix: | |
# platform: [ubuntu-latest, windows-latest, macos-latest] | |
platform: [ubuntu-latest] | |
python-version: ['3.9', '3.11'] | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache-dependency-path: "pyproject.toml" | |
cache: "pip" | |
- name: Install dependencies | |
shell: bash -l {0} | |
run: | | |
python -m pip install --upgrade pip | |
pip install pytest pytest-cov | |
pip install -e . | |
- name: Run tests | |
shell: bash -l {0} | |
run: pytest --color=yes -v --cov=./ --cov-report=xml --cov-report=term-missing | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |