Skip to content
@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

Pinned Loading

  1. fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 7 3

  2. visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts Public

    Python 1

Repositories

Showing 10 of 58 repositories
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    Python 11 BSD-3-Clause 7 18 1 Updated Apr 9, 2025
  • napari-save-transformed Public

    Save image layers with their transformation applied

    Python 2 BSD-3-Clause 0 2 0 Updated Apr 9, 2025
  • pytorch-rdc-net Public
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Apr 9, 2025
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    Python 1 MIT 1 8 4 Updated Apr 7, 2025
  • example-project Public
    Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Apr 7, 2025
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    Jinja 5 MIT 3 5 (1 issue needs help) 1 Updated Apr 7, 2025
  • cellvoyager-types Public

    Pydantic models for CellVoyager CV7000/CV8000 metadata

    Python 0 BSD-3-Clause 0 0 1 Updated Apr 4, 2025
  • napari-stitcher Public Forked from multiview-stitcher/napari-stitcher

    A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher

    Python 0 BSD-3-Clause 5 0 0 Updated Apr 2, 2025
  • metamorph-mda-parser Public

    Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

    Python 0 BSD-3-Clause 0 2 1 Updated Apr 1, 2025
  • napari-psf-analysis Public

    A napari plugin to analysis point spread functions.

    Python 12 BSD-3-Clause 4 11 (1 issue needs help) 1 Updated Mar 28, 2025
View all repositories