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enable plotting neurons and meshes with ggplot2
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alexanderbates committed Jul 5, 2024
1 parent e630eb7 commit f18da6c
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Showing 5 changed files with 415 additions and 60 deletions.
16 changes: 16 additions & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,9 @@ S3method(banc_decapitate,matrix)
S3method(banc_decapitate,mesh3d)
S3method(banc_decapitate,neuron)
S3method(banc_decapitate,neuronlist)
S3method(geom_neuron,neuron)
S3method(geom_neuron,neuronlist)
S3method(ggplot2_neuron_path,mesh3d)
S3method(ggplot2_neuron_path,neuron)
S3method(ggplot2_neuron_path,neuronlist)
export(banc_all_synapses)
Expand All @@ -25,6 +28,7 @@ export(banc_latestid)
export(banc_leaves)
export(banc_neck_connective.surf)
export(banc_neck_connective_neurons)
export(banc_neuron_comparison_plot)
export(banc_neuropil.surf)
export(banc_nm2raw)
export(banc_nuclei)
Expand All @@ -49,11 +53,23 @@ export(banc_voxdims)
export(banc_xyz2id)
export(choose_banc)
export(dr_banc)
export(geom_neuron)
export(ggplot2_neuron_path)
export(with_banc)
import(bit64)
import(fafbseg)
import(nat.flybrains)
importFrom(ggnewscale,new_scale_colour)
importFrom(ggnewscale,new_scale_fill)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(ggpubr,ggarrange)
importFrom(nat,xyzmatrix)
importFrom(pbapply,pbsapply)
importFrom(utils,browseURL)
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